Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MTZ49_RS08450 Genome accession   NZ_CP094972
Coordinates   1765721..1766587 (-) Length   288 a.a.
NCBI ID   WP_264745115.1    Uniprot ID   -
Organism   Entomomonas sp. E2T0     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1760721..1771587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTZ49_RS08420 (MTZ49_08415) rbfA 1760754..1761143 (+) 390 WP_264745110.1 30S ribosome-binding factor RbfA -
  MTZ49_RS08425 (MTZ49_08420) truB 1761140..1762057 (+) 918 WP_264745111.1 tRNA pseudouridine(55) synthase TruB -
  MTZ49_RS08430 (MTZ49_08425) rpsO 1762211..1762480 (+) 270 WP_201094453.1 30S ribosomal protein S15 -
  MTZ49_RS08435 (MTZ49_08430) pnp 1762624..1764759 (+) 2136 WP_264745112.1 polyribonucleotide nucleotidyltransferase -
  MTZ49_RS08440 (MTZ49_08435) yacG 1764809..1765027 (-) 219 WP_264745113.1 DNA gyrase inhibitor YacG -
  MTZ49_RS08445 (MTZ49_08440) coaE 1765032..1765634 (-) 603 WP_264745114.1 dephospho-CoA kinase -
  MTZ49_RS08450 (MTZ49_08445) pilD 1765721..1766587 (-) 867 WP_264745115.1 prepilin peptidase Machinery gene
  MTZ49_RS08455 (MTZ49_08450) pilC 1766593..1767801 (-) 1209 WP_264745116.1 type II secretion system F family protein Machinery gene
  MTZ49_RS08460 (MTZ49_08455) pilB 1767982..1769646 (-) 1665 WP_264745117.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MTZ49_RS08465 (MTZ49_08460) - 1769812..1770792 (-) 981 WP_264745118.1 two-component system response regulator -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31558.73 Da        Isoelectric Point: 8.0197

>NTDB_id=674629 MTZ49_RS08450 WP_264745115.1 1765721..1766587(-) (pilD) [Entomomonas sp. E2T0]
MTVFTEIPSLFIFASLLIGLLVGSFLNVVIYRLPKMMINAWQQEAREILEQPQPIEPQTKFNLFLPSSTCPHCGHKITAV
ENIPIISYLVLRGRCRGCKAPISKRYPLVELCSGILSGWIAWYFGFSAEALLLILLTWGLIAMSMIDIDHQLLPDSLVLP
LLWVGILANAYGLFPDISINSAILGAVIGYMSLWTVNALFKLLRGYDGMGHGDFKLLALFGAWGGYQILPVVILLSAAAG
AVIGIIGLLLFAGKNKMPYGPYLAIAGWIALIWGQDIVSAYLKFSGLN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=674629 MTZ49_RS08450 WP_264745115.1 1765721..1766587(-) (pilD) [Entomomonas sp. E2T0]
ATGACTGTTTTTACCGAAATTCCTTCGTTATTTATTTTTGCCTCCCTACTAATAGGTTTATTAGTAGGGAGTTTTCTTAA
TGTGGTTATTTATCGTTTACCTAAGATGATGATCAATGCTTGGCAGCAGGAGGCTCGTGAAATTCTTGAGCAACCTCAAC
CTATTGAGCCACAAACTAAGTTTAATCTATTTCTACCCTCTTCTACCTGTCCCCATTGTGGCCATAAAATAACAGCAGTA
GAAAATATACCTATCATTAGTTACTTAGTATTAAGAGGTCGTTGTAGAGGCTGTAAAGCGCCTATTAGTAAACGTTACCC
CCTTGTAGAATTATGTTCAGGTATTCTTTCTGGTTGGATTGCTTGGTATTTTGGCTTTTCTGCTGAAGCACTATTGCTTA
TTTTATTAACTTGGGGTCTTATAGCAATGAGTATGATCGATATCGATCATCAGTTACTACCTGACTCATTAGTATTACCT
TTATTGTGGGTAGGCATTCTTGCTAATGCTTATGGATTATTCCCTGATATCAGCATCAATAGTGCTATTTTGGGGGCTGT
AATAGGTTATATGTCACTATGGACTGTAAACGCCCTCTTTAAACTACTACGTGGTTATGATGGCATGGGGCATGGCGACT
TTAAACTACTTGCTCTGTTTGGTGCATGGGGTGGCTATCAAATTTTACCTGTAGTTATTCTACTATCCGCCGCAGCTGGT
GCAGTAATAGGTATTATTGGTCTATTATTATTTGCAGGCAAAAATAAAATGCCCTATGGTCCCTACTTAGCTATTGCTGG
TTGGATTGCCCTAATTTGGGGACAAGATATCGTTTCTGCTTACTTAAAGTTTTCAGGCCTCAATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

49.474

98.958

0.49
  pilD Vibrio campbellii strain DS40M4

49.123

98.958

0.486
  pilD Acinetobacter baumannii D1279779

48.699

93.403

0.455
  pilD Acinetobacter nosocomialis M2

48.699

93.403

0.455
  pilD Neisseria gonorrhoeae MS11

49.012

87.847

0.431