Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   lgb_RS03575 Genome accession   NZ_CP094882
Coordinates   725804..726220 (+) Length   138 a.a.
NCBI ID   WP_249663247.1    Uniprot ID   -
Organism   Lactococcus petauri strain B1726     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 716011..755642 725804..726220 within 0


Gene organization within MGE regions


Location: 716011..755642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lgb_RS03510 (lgb_00695) - 716011..716745 (+) 735 WP_019292134.1 TIGR02206 family membrane protein -
  lgb_RS03515 (lgb_00696) gyrB 716907..718865 (+) 1959 WP_019292133.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  lgb_RS03520 (lgb_00697) - 718951..720075 (-) 1125 WP_249663237.1 tyrosine-type recombinase/integrase -
  lgb_RS03525 (lgb_00698) - 720198..721694 (-) 1497 WP_249663238.1 GIY-YIG nuclease family protein -
  lgb_RS03530 (lgb_00699) - 721807..722400 (-) 594 WP_249663239.1 hypothetical protein -
  lgb_RS03535 (lgb_00700) - 722412..722759 (-) 348 WP_249663240.1 helix-turn-helix domain-containing protein -
  lgb_RS03540 (lgb_00701) - 723051..723269 (+) 219 WP_249663241.1 hypothetical protein -
  lgb_RS03545 (lgb_00702) - 723281..723532 (+) 252 WP_249663242.1 hypothetical protein -
  lgb_RS03550 (lgb_00704) - 723740..723937 (+) 198 WP_019292872.1 hypothetical protein -
  lgb_RS03555 (lgb_00705) - 723915..724304 (-) 390 WP_249663243.1 DUF2513 domain-containing protein -
  lgb_RS03560 (lgb_00706) - 724448..724639 (+) 192 WP_249663244.1 helix-turn-helix domain-containing protein -
  lgb_RS03565 (lgb_00707) - 724724..725122 (+) 399 WP_249663245.1 DUF2800 domain-containing protein -
  lgb_RS03570 (lgb_00708) - 725134..725814 (+) 681 WP_249663246.1 DUF1071 domain-containing protein -
  lgb_RS03575 (lgb_00709) ssbA 725804..726220 (+) 417 WP_249663247.1 single-stranded DNA-binding protein Machinery gene
  lgb_RS03580 (lgb_00710) - 726320..726550 (+) 231 WP_249663248.1 helix-turn-helix domain-containing protein -
  lgb_RS03585 (lgb_00711) - 726550..726714 (+) 165 WP_249663249.1 hypothetical protein -
  lgb_RS03590 (lgb_00712) - 726717..727502 (+) 786 WP_249663250.1 helix-turn-helix domain-containing protein -
  lgb_RS03595 (lgb_00713) - 727489..727773 (+) 285 WP_249663251.1 hypothetical protein -
  lgb_RS03600 (lgb_00714) - 727770..728174 (+) 405 WP_249663252.1 RusA family crossover junction endodeoxyribonuclease -
  lgb_RS03605 (lgb_00715) - 728280..728561 (+) 282 WP_249663253.1 hypothetical protein -
  lgb_RS03610 - 728666..729010 (-) 345 Protein_705 DUF805 domain-containing protein -
  lgb_RS03615 (lgb_00716) - 729173..729571 (-) 399 WP_249663254.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  lgb_RS03620 (lgb_00717) - 729762..730163 (+) 402 WP_249663255.1 DUF722 domain-containing protein -
  lgb_RS03625 (lgb_00718) - 730430..731527 (+) 1098 WP_249663256.1 lysozyme -
  lgb_RS03630 (lgb_00719) - 731746..732372 (+) 627 WP_249663257.1 CHAP domain-containing protein -
  lgb_RS03640 (lgb_00721) - 732675..733223 (+) 549 WP_249663258.1 hypothetical protein -
  lgb_RS03645 (lgb_00722) - 733434..733943 (+) 510 WP_249663259.1 terminase small subunit -
  lgb_RS03650 (lgb_00723) - 733936..735156 (+) 1221 WP_249663260.1 PBSX family phage terminase large subunit -
  lgb_RS03655 (lgb_00724) - 735157..736500 (+) 1344 WP_249663261.1 phage portal protein -
  lgb_RS03660 (lgb_00725) - 736504..737547 (+) 1044 WP_249663262.1 minor capsid protein -
  lgb_RS03665 (lgb_00726) - 737656..738270 (+) 615 WP_249663263.1 DUF4355 domain-containing protein -
  lgb_RS03670 (lgb_00727) - 738280..739212 (+) 933 WP_249663264.1 phage major capsid protein -
  lgb_RS03675 (lgb_00728) - 739230..739469 (+) 240 WP_249663265.1 Ig-like domain-containing protein -
  lgb_RS03680 (lgb_00729) - 739480..739812 (+) 333 WP_249663266.1 phage head-tail connector protein -
  lgb_RS03685 (lgb_00730) - 739809..740120 (+) 312 WP_249663267.1 hypothetical protein -
  lgb_RS03690 (lgb_00731) - 740129..740455 (+) 327 WP_249663268.1 HK97-gp10 family putative phage morphogenesis protein -
  lgb_RS03695 (lgb_00732) - 740452..740841 (+) 390 WP_249663269.1 phage capsid protein -
  lgb_RS03700 (lgb_00733) - 740851..741393 (+) 543 WP_249663270.1 phage major tail protein, TP901-1 family -
  lgb_RS03705 (lgb_00734) - 741430..741762 (+) 333 WP_249663271.1 tail assembly chaperone -
  lgb_RS03710 (lgb_00735) - 741831..742127 (+) 297 WP_249663272.1 hypothetical protein -
  lgb_RS03715 (lgb_00736) - 742142..745207 (+) 3066 WP_249663273.1 phage tail tape measure protein -
  lgb_RS03720 (lgb_00737) - 745216..745977 (+) 762 WP_249663274.1 distal tail protein Dit -
  lgb_RS03725 (lgb_00738) - 745977..748811 (+) 2835 WP_249663275.1 phage tail spike protein -
  lgb_RS03730 (lgb_00739) - 748827..749771 (+) 945 WP_249663276.1 BppU family phage baseplate upper protein -
  lgb_RS03735 (lgb_00740) - 749775..750650 (+) 876 WP_249663277.1 fibronectin type III domain-containing protein -
  lgb_RS03740 (lgb_00741) - 750662..751066 (+) 405 WP_249663278.1 hypothetical protein -
  lgb_RS03745 (lgb_00742) - 751084..751446 (+) 363 WP_019299702.1 hypothetical protein -
  lgb_RS03750 (lgb_00743) - 751430..752554 (+) 1125 WP_249663279.1 LysM peptidoglycan-binding domain-containing protein -
  lgb_RS03755 (lgb_00744) - 752643..753182 (+) 540 WP_249663280.1 hypothetical protein -
  lgb_RS03760 (lgb_00745) - 753337..753801 (+) 465 WP_249663281.1 hypothetical protein -
  lgb_RS03765 - 753857..754069 (+) 213 WP_249663282.1 hypothetical protein -
  lgb_RS03770 (lgb_00746) - 754167..754682 (+) 516 WP_249663283.1 YfbU family protein -
  lgb_RS03775 (lgb_00747) - 754790..754972 (-) 183 WP_249663284.1 hypothetical protein -
  lgb_RS03780 (lgb_00748) - 755448..755642 (+) 195 WP_249663285.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15567.51 Da        Isoelectric Point: 6.3890

>NTDB_id=673944 lgb_RS03575 WP_249663247.1 725804..726220(+) (ssbA) [Lactococcus petauri strain B1726]
MINNVVLVGRIVREPELRYTPQNTAVATFTLAVNRRFKNAQGEREADFINCVIWRQPAENLANWAKKGTLVGITGSIQVR
NYENKEGQRVYVTEVLADSFQMIESNSNKTEKGKTKSNQDKDPFAGSPMEVSDDDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=673944 lgb_RS03575 WP_249663247.1 725804..726220(+) (ssbA) [Lactococcus petauri strain B1726]
ATGATAAATAATGTTGTGTTAGTTGGACGTATTGTCCGTGAACCAGAATTAAGATATACACCTCAGAATACGGCAGTAGC
TACTTTCACTTTAGCAGTAAATCGCCGTTTTAAAAATGCTCAGGGTGAACGAGAAGCAGATTTTATAAACTGTGTTATCT
GGAGACAGCCCGCTGAAAACTTAGCAAATTGGGCAAAAAAAGGAACTTTAGTTGGTATTACTGGAAGTATTCAAGTGAGA
AATTATGAGAACAAGGAAGGCCAACGTGTTTATGTAACAGAAGTATTGGCTGATAGCTTTCAAATGATAGAAAGTAATTC
AAATAAAACAGAAAAAGGTAAAACTAAATCTAATCAAGATAAAGATCCTTTTGCAGGTTCACCAATGGAAGTCTCAGATG
ATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.581

100

0.63
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.623
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.654

75.362

0.442
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.203

100

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.029

100

0.42
  ssbA Streptococcus mutans UA159

41.304

100

0.413
  ssbB/cilA Streptococcus mitis NCTC 12261

41.304

100

0.413
  ssbB/cilA Streptococcus pneumoniae Rx1

41.304

100

0.413
  ssbB/cilA Streptococcus pneumoniae D39

41.304

100

0.413
  ssbB/cilA Streptococcus pneumoniae R6

41.304

100

0.413
  ssbB/cilA Streptococcus mitis SK321

41.304

100

0.413