Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MTP21_RS13125 Genome accession   NZ_CP094880
Coordinates   2874016..2875755 (-) Length   579 a.a.
NCBI ID   WP_243975170.1    Uniprot ID   -
Organism   Vibrio natriegens strain WPAGA4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2869016..2880755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS13105 - 2869722..2870561 (-) 840 WP_243975159.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  MTP21_RS13110 - 2870631..2872124 (-) 1494 WP_243975161.1 AAA family ATPase -
  MTP21_RS13115 aroB 2872177..2873277 (-) 1101 WP_014233146.1 3-dehydroquinate synthase -
  MTP21_RS13120 aroK 2873309..2873827 (-) 519 WP_014233147.1 shikimate kinase AroK -
  MTP21_RS13125 pilQ 2874016..2875755 (-) 1740 WP_243975170.1 type IV pilus secretin PilQ family protein Machinery gene
  MTP21_RS13130 pilP 2875798..2876313 (-) 516 WP_243975173.1 pilus assembly protein PilP Machinery gene
  MTP21_RS13135 pilO 2876303..2876896 (-) 594 WP_020334615.1 type 4a pilus biogenesis protein PilO Machinery gene
  MTP21_RS13140 pilN 2876889..2877464 (-) 576 WP_243975175.1 PilN domain-containing protein Machinery gene
  MTP21_RS13145 pilM 2877448..2878464 (-) 1017 WP_243975186.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 63538.51 Da        Isoelectric Point: 4.3767

>NTDB_id=673902 MTP21_RS13125 WP_243975170.1 2874016..2875755(-) (pilQ) [Vibrio natriegens strain WPAGA4]
MIMRQGLTRTPRMLTGLLSFWLVLLFTPFALADGGMSNALKSIDFRTNKDKDAVIVVELSSPASIVDIQRVQEGLSIDLL
NTSVKDEQLYLLDVKDFSTVVDSVEVFREVSTTRLVAHISDDYTHDYRLAGRYLEITVSKLKSDEKIPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQ
LEKQQLEEEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLVRELPENILVIRDIIESLDIPVK
QVQIEARIVTVSEGNMDELGIRWGFSSINGNNTVGGSIENNLATIGLYEGDGEEGEGGSVGIDDFLNVNLAATNPSATSI
AFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTITFKKAVLSLKVTPQITP
DNRLVLDLSVTQDRPGQVVKTGTGEAVTIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSY
EKVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=673902 MTP21_RS13125 WP_243975170.1 2874016..2875755(-) (pilQ) [Vibrio natriegens strain WPAGA4]
ATGATAATGAGACAAGGACTTACACGTACACCAAGGATGCTCACTGGGCTCTTATCCTTTTGGTTAGTTTTACTTTTTAC
CCCTTTTGCTTTGGCTGATGGCGGGATGTCTAATGCGTTAAAGAGTATCGACTTTCGCACGAATAAGGACAAAGACGCGG
TGATTGTGGTGGAACTGTCTTCACCAGCGTCGATAGTCGATATTCAGCGCGTTCAGGAAGGGCTGAGCATCGATTTGCTG
AATACGTCAGTGAAAGATGAACAGTTATATCTCCTCGATGTAAAGGATTTTTCAACGGTAGTGGACAGTGTGGAAGTCTT
TCGTGAAGTCTCGACGACCCGTTTAGTCGCGCACATCAGTGATGATTACACCCATGATTACCGCTTGGCAGGGCGCTATT
TGGAAATCACGGTCAGTAAACTCAAGTCTGATGAAAAAATACCAGATAAGAGCATTTTAGAGAAAGAAGGCAAACTGATA
TCGATTAACTTCCAGGATATCCCGGTACGTAACGTCTTACAGCTCATTGCCGACTATAACCAGTTTAACCTAGTGGTATC
AGACTCGGTCGAAGGCAACCTGACACTGCGACTTGATGGTGTGCCTTGGCAGCAGGTTTTGGACATTATTCTGCAAGTAA
AAGGTTTGGATAAGCGAGTTGATGGTAATGTCATTCTTGTCGCGCCGACGGATGAACTTGACCTTCGAGAGAAGCAGCAA
TTAGAGAAGCAGCAACTTGAAGAGGAAATGGGCGAACTGTCGTCTGAGATAATCAAAGTGAACTTTGCCAAAGCGTCCGA
TATTGCTGAAATGATTAATGGTGAAGGCAATATCAGCATGCTCTCTGAACGAGGCAGCATGACGATTGATGAGCGCACTA
ACTCACTATTGGTCAGAGAATTGCCAGAGAATATCTTGGTTATTCGTGACATTATCGAGTCACTCGATATTCCGGTTAAG
CAGGTGCAAATCGAAGCGAGAATTGTCACCGTCAGTGAAGGGAATATGGATGAACTCGGCATTCGATGGGGATTCTCTTC
CATCAACGGCAATAACACCGTTGGTGGCTCGATTGAAAATAATCTGGCAACCATTGGCCTTTATGAAGGTGATGGTGAAG
AGGGCGAGGGCGGCAGTGTTGGAATTGATGATTTTCTTAACGTCAACCTGGCCGCTACTAACCCGAGCGCAACCAGCATT
GCGTTTCAGGTCGCCAAGTTGGGCTCTGACACTTTGCTCGATCTGGAACTTTCTGCGCTGCAGCAGGAGTCGAAAGCAGA
GATCATCTCAAGCCCTCGTTTAATCACGACTAATAAAAAACCTGCCTATATAGAACAAGGTACAGAAATTCCGTATCTAG
AATCATCATCGAGTGGTGCGACAACCATCACGTTCAAAAAAGCGGTGTTAAGTCTGAAAGTCACGCCACAAATTACCCCG
GATAACCGTCTGGTGCTGGATTTAAGTGTTACTCAGGACAGACCGGGGCAAGTGGTAAAAACTGGAACTGGCGAAGCGGT
CACAATAGACACCCAGAGAATAGGTACTCAAGTCTTAGTAAACAACGGTGAGACGGTTGTTCTTGGCGGCATTTTCCAAC
ACAGCATTACCAACTCTGTCGATAAAGTGCCATTACTCGGTGATCTGCCGTTATTAGGTGCACTTTTCCGCAGAAGTTAT
GAAAAAGTTGGTAAAAGTGAACTGCTGATTTTCGTTACACCAAAGGTTGTTATTCAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)

Bacterial type II and III secretion system protein (Secretin)

(419-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

88.793

100

0.889
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

75.752

97.582

0.739
  pilQ Vibrio cholerae strain A1552

75.752

97.582

0.739
  pilQ Legionella pneumophila strain Lp02

41.273

94.991

0.392
  pilQ Legionella pneumophila strain ERS1305867

41.273

94.991

0.392
  pilQ Pseudomonas aeruginosa PAK

40.217

95.337

0.383
  pilQ Acinetobacter baumannii D1279779

37.649

100

0.382
  pilQ Acinetobacter baumannii strain A118

37.649

100

0.382
  comQ Acinetobacter baylyi ADP1

37.478

100

0.375