Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   MTP21_RS13145 Genome accession   NZ_CP094880
Coordinates   2877448..2878464 (-) Length   338 a.a.
NCBI ID   WP_243975186.1    Uniprot ID   -
Organism   Vibrio natriegens strain WPAGA4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2872448..2883464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS13120 aroK 2873309..2873827 (-) 519 WP_014233147.1 shikimate kinase AroK -
  MTP21_RS13125 pilQ 2874016..2875755 (-) 1740 WP_243975170.1 type IV pilus secretin PilQ family protein Machinery gene
  MTP21_RS13130 pilP 2875798..2876313 (-) 516 WP_243975173.1 pilus assembly protein PilP Machinery gene
  MTP21_RS13135 pilO 2876303..2876896 (-) 594 WP_020334615.1 type 4a pilus biogenesis protein PilO Machinery gene
  MTP21_RS13140 pilN 2876889..2877464 (-) 576 WP_243975175.1 PilN domain-containing protein Machinery gene
  MTP21_RS13145 pilM 2877448..2878464 (-) 1017 WP_243975186.1 type IV pilus assembly protein PilM Machinery gene
  MTP21_RS13150 - 2878608..2881175 (+) 2568 WP_243975187.1 PBP1A family penicillin-binding protein -
  MTP21_RS13155 oxyR 2881239..2882147 (-) 909 WP_014233154.1 DNA-binding transcriptional regulator OxyR -
  MTP21_RS13160 - 2882306..2883034 (+) 729 WP_065300291.1 redoxin family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37635.83 Da        Isoelectric Point: 7.2508

>NTDB_id=673906 MTP21_RS13145 WP_243975186.1 2877448..2878464(-) (pilM) [Vibrio natriegens strain WPAGA4]
MDKRIVTGIDIGHNSLKAVVLKPNGEQFALLGYKEILLKDGIVAENNTINHQEIVNTLKQVKKDLPFGASRVAISVPDNA
VISKKLHIEQDLEENEIEFAVVQAFSHQSPFPVDELSLDFVRLNHEGGLRGPVSYQVFATRKDVVESRVEAIRKSGFKPV
LVEVHSQSLGQIWKLATERFPDKNNYGLLDVGSVSSSFTMFTEQNELFHKEFACGTGSIHCSVQESPLSGEEQAKTSQFN
RQMVDRVKRQIQLYTSINGSQNIKGLWLSGEGSTTPMLAEELSHQLAVECELLNPLGLFQMNVAKRKRRAAEWQHFSTAA
GLAVRGIQWLGGRRALSN

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=673906 MTP21_RS13145 WP_243975186.1 2877448..2878464(-) (pilM) [Vibrio natriegens strain WPAGA4]
ATGGATAAGCGAATCGTTACAGGCATCGATATAGGCCATAACAGCCTCAAAGCCGTCGTACTTAAACCCAATGGCGAGCA
ATTCGCCTTGTTGGGTTACAAAGAAATATTACTTAAGGATGGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAATACCCTTAAACAGGTGAAAAAAGACCTGCCATTTGGTGCAAGCAGAGTGGCAATTTCAGTCCCTGATAATGCA
GTTATCAGCAAAAAACTGCACATCGAACAAGACCTTGAAGAGAACGAAATAGAGTTCGCGGTCGTGCAGGCATTTTCTCA
TCAATCTCCTTTCCCTGTAGATGAGTTGAGTCTGGACTTTGTCCGTCTTAATCATGAAGGAGGCCTGCGAGGGCCTGTTA
GCTACCAAGTTTTTGCGACACGTAAAGATGTCGTGGAGAGTCGGGTTGAAGCAATACGTAAATCCGGTTTTAAACCTGTC
CTCGTCGAGGTCCATTCACAAAGCCTCGGGCAGATATGGAAACTGGCCACAGAACGTTTTCCAGATAAAAACAACTACGG
TTTGCTTGATGTTGGTTCTGTGTCGAGCTCTTTCACGATGTTCACCGAGCAAAACGAGCTATTTCATAAAGAGTTTGCCT
GTGGAACAGGTTCCATTCATTGCTCTGTGCAGGAAAGCCCTCTGTCCGGAGAAGAACAAGCCAAAACGAGTCAATTCAAT
CGTCAGATGGTCGATCGTGTCAAACGCCAGATACAGCTTTATACGTCCATTAACGGATCACAAAACATCAAAGGTCTTTG
GTTATCCGGTGAAGGGTCAACAACGCCAATGCTGGCTGAGGAGCTATCTCATCAATTGGCGGTCGAGTGCGAGTTACTGA
ACCCGTTAGGCTTATTTCAAATGAACGTCGCTAAACGTAAGCGTCGAGCGGCAGAGTGGCAGCACTTTTCAACCGCCGCT
GGCTTGGCAGTACGAGGTATCCAATGGTTAGGAGGTCGCCGTGCTTTATCGAATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

75.148

100

0.751
  pilM Vibrio cholerae strain A1552

47.619

99.408

0.473