Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB06_RS50125 Genome accession   NZ_CP109312
Coordinates   11074299..11074970 (+) Length   223 a.a.
NCBI ID   WP_406498449.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01604     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 11069299..11079970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB06_RS50105 (OHB06_50105) - 11070033..11071520 (+) 1488 WP_406498445.1 AbgT family transporter -
  OHB06_RS50110 (OHB06_50110) - 11071459..11072274 (-) 816 WP_266453209.1 class I SAM-dependent methyltransferase -
  OHB06_RS50115 (OHB06_50115) - 11072549..11073025 (+) 477 WP_406498447.1 hypothetical protein -
  OHB06_RS50120 (OHB06_50120) - 11073091..11073675 (-) 585 WP_406499293.1 GNAT family N-acetyltransferase -
  OHB06_RS50125 (OHB06_50125) dinR/lexA 11074299..11074970 (+) 672 WP_406498449.1 transcriptional repressor LexA Regulator
  OHB06_RS50130 (OHB06_50130) - 11075054..11075314 (-) 261 WP_266452559.1 hypothetical protein -
  OHB06_RS50135 (OHB06_50135) - 11075354..11075581 (-) 228 WP_266453211.1 Ku protein -
  OHB06_RS50140 (OHB06_50140) - 11075630..11076874 (-) 1245 WP_406498451.1 MFS transporter -
  OHB06_RS50145 (OHB06_50145) - 11077312..11078061 (-) 750 WP_406498453.1 transposase family protein -
  OHB06_RS50150 (OHB06_50150) - 11078531..11079127 (+) 597 WP_406498455.1 DinB family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24019.44 Da        Isoelectric Point: 5.1088

>NTDB_id=673906 OHB06_RS50125 WP_406498449.1 11074299..11074970(+) (dinR/lexA) [Streptomyces sp. NBC_01604]
MDNSAPARRGRPPGSGTAEGELTDRQSAIVRYITESVAGQGYPPSMREIGKAVGLVSTSSVAHQLMTLERKGVLYRDPHR
PRAYQVRPSWAPDLGTRSVAPVEVPLVGRIAAGAPLLAEELVEDVYSLPRQVVGDGDLFALTVSGDSMIDASICDGDMVI
VRRMDSADHGDIVAALLEDEATVKVLRRQEGQVWLMPRNPAYEPIPGDQAQILGKVVGVLRML

Nucleotide


Download         Length: 672 bp        

>NTDB_id=673906 OHB06_RS50125 WP_406498449.1 11074299..11074970(+) (dinR/lexA) [Streptomyces sp. NBC_01604]
ATGGACAACAGCGCGCCAGCACGCCGGGGCCGTCCCCCGGGCTCCGGTACCGCGGAGGGGGAGCTGACGGACCGCCAGTC
GGCCATCGTCCGCTACATCACGGAGTCGGTCGCGGGGCAGGGCTACCCGCCGTCGATGCGGGAGATCGGCAAGGCCGTGG
GCCTCGTCAGTACGTCCTCGGTCGCCCACCAGCTGATGACCCTCGAGCGCAAGGGCGTCCTCTACCGTGACCCGCACCGT
CCACGCGCCTACCAGGTACGGCCCTCCTGGGCGCCCGACCTGGGCACCAGGAGCGTAGCGCCGGTCGAGGTGCCGCTGGT
GGGACGGATCGCCGCCGGTGCACCCCTGCTCGCCGAGGAACTGGTCGAGGACGTCTACTCCCTGCCCCGCCAAGTCGTCG
GTGACGGCGACCTGTTCGCCCTGACGGTCTCCGGCGACAGCATGATCGACGCATCGATCTGTGACGGCGACATGGTCATC
GTCCGCCGCATGGACAGCGCCGACCACGGCGACATCGTCGCCGCGCTCCTGGAGGACGAAGCAACCGTCAAGGTGCTGCG
CCGGCAGGAGGGGCAGGTGTGGCTCATGCCCCGCAACCCCGCCTACGAGCCGATCCCCGGCGACCAGGCGCAGATCCTCG
GCAAGGTCGTCGGCGTACTCCGCATGCTCTAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.366

91.928

0.417