Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA97_RS08135 Genome accession   NZ_CP094811
Coordinates   1667836..1668255 (-) Length   139 a.a.
NCBI ID   WP_262608276.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6187     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1638350..1685405 1667836..1668255 within 0


Gene organization within MGE regions


Location: 1638350..1685405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA97_RS07940 (MUA97_07925) - 1638350..1639819 (-) 1470 WP_262608240.1 SH3 domain-containing protein -
  MUA97_RS07945 (MUA97_07930) - 1639821..1640069 (-) 249 WP_194747456.1 phage holin -
  MUA97_RS07950 (MUA97_07935) - 1640209..1640553 (-) 345 WP_060551317.1 hypothetical protein -
  MUA97_RS07955 (MUA97_07940) - 1640601..1640915 (-) 315 WP_262608242.1 hypothetical protein -
  MUA97_RS07960 (MUA97_07945) - 1640958..1641107 (-) 150 WP_262608243.1 hypothetical protein -
  MUA97_RS07965 (MUA97_07950) - 1641118..1644600 (-) 3483 WP_262608244.1 phage tail spike protein -
  MUA97_RS07970 (MUA97_07955) - 1644602..1646089 (-) 1488 WP_262608245.1 phage tail family protein -
  MUA97_RS07975 (MUA97_07960) - 1646086..1650891 (-) 4806 WP_262608246.1 phage tail tape measure protein -
  MUA97_RS07980 (MUA97_07965) gpGT 1650908..1651051 (-) 144 WP_262608247.1 phage tail assembly chaperone GT -
  MUA97_RS07985 (MUA97_07970) gpG 1651111..1651482 (-) 372 WP_262608248.1 phage tail assembly chaperone G -
  MUA97_RS07990 (MUA97_07975) - 1651542..1651721 (-) 180 WP_262608249.1 hypothetical protein -
  MUA97_RS07995 (MUA97_07980) - 1651742..1652365 (-) 624 WP_262608250.1 major tail protein -
  MUA97_RS08000 (MUA97_07985) - 1652378..1652788 (-) 411 WP_262608251.1 hypothetical protein -
  MUA97_RS08005 (MUA97_07990) - 1652794..1653183 (-) 390 WP_262608252.1 hypothetical protein -
  MUA97_RS08010 (MUA97_07995) - 1653173..1653541 (-) 369 WP_262608254.1 hypothetical protein -
  MUA97_RS08015 (MUA97_08000) - 1653525..1653812 (-) 288 WP_262608255.1 phage gp6-like head-tail connector protein -
  MUA97_RS08020 (MUA97_08005) - 1653830..1655038 (-) 1209 WP_262608256.1 phage major capsid protein -
  MUA97_RS08025 (MUA97_08010) - 1655050..1655763 (-) 714 WP_262608257.1 head maturation protease, ClpP-related -
  MUA97_RS08030 (MUA97_08015) - 1655726..1656904 (-) 1179 WP_262608258.1 phage portal protein -
  MUA97_RS08035 (MUA97_08020) - 1656924..1658591 (-) 1668 WP_262608259.1 terminase TerL endonuclease subunit -
  MUA97_RS08040 (MUA97_08025) - 1658578..1658961 (-) 384 WP_107371945.1 hypothetical protein -
  MUA97_RS08045 (MUA97_08030) - 1659108..1659422 (-) 315 WP_262608260.1 HNH endonuclease -
  MUA97_RS08050 (MUA97_08035) - 1659687..1660082 (-) 396 WP_262608261.1 hypothetical protein -
  MUA97_RS08055 (MUA97_08040) - 1660348..1660536 (-) 189 WP_262608262.1 hypothetical protein -
  MUA97_RS08060 (MUA97_08045) - 1660799..1661098 (-) 300 WP_165805114.1 MazG-like family protein -
  MUA97_RS08065 (MUA97_08050) - 1661246..1661605 (-) 360 WP_262608263.1 thermonuclease family protein -
  MUA97_RS08070 (MUA97_08055) - 1661612..1661848 (-) 237 WP_262608264.1 hypothetical protein -
  MUA97_RS08075 (MUA97_08060) - 1661852..1662052 (-) 201 WP_262608265.1 hypothetical protein -
  MUA97_RS08080 (MUA97_08065) - 1662042..1662302 (-) 261 WP_262608266.1 hypothetical protein -
  MUA97_RS08085 (MUA97_08070) - 1662299..1662685 (-) 387 WP_262608267.1 hypothetical protein -
  MUA97_RS08090 (MUA97_08075) dcm 1662672..1663916 (-) 1245 WP_262608268.1 DNA (cytosine-5-)-methyltransferase -
  MUA97_RS08095 (MUA97_08080) - 1663928..1664140 (-) 213 WP_262608269.1 DUF3269 family protein -
  MUA97_RS08100 (MUA97_08085) - 1664140..1664331 (-) 192 WP_103345527.1 hypothetical protein -
  MUA97_RS08105 (MUA97_08090) - 1664426..1664758 (-) 333 WP_262608270.1 hypothetical protein -
  MUA97_RS08110 (MUA97_08095) - 1664760..1665182 (-) 423 WP_262608271.1 RusA family crossover junction endodeoxyribonuclease -
  MUA97_RS08120 (MUA97_08105) - 1665346..1666131 (-) 786 WP_262608273.1 ATP-binding protein -
  MUA97_RS08125 (MUA97_08110) - 1666132..1666914 (-) 783 WP_262608274.1 conserved phage C-terminal domain-containing protein -
  MUA97_RS08130 (MUA97_08115) - 1667150..1667824 (-) 675 WP_262608275.1 putative HNHc nuclease -
  MUA97_RS08135 (MUA97_08120) ssbA 1667836..1668255 (-) 420 WP_262608276.1 single-stranded DNA-binding protein Machinery gene
  MUA97_RS08140 (MUA97_08125) - 1668248..1668892 (-) 645 WP_262608277.1 ERF family protein -
  MUA97_RS08145 (MUA97_08130) - 1668879..1669445 (-) 567 WP_262608278.1 NUMOD4 motif-containing HNH endonuclease -
  MUA97_RS08150 (MUA97_08135) - 1669442..1669660 (-) 219 WP_262608279.1 DUF2483 domain-containing protein -
  MUA97_RS08155 (MUA97_08140) - 1669657..1669923 (-) 267 WP_262608280.1 DUF1108 family protein -
  MUA97_RS08160 (MUA97_08145) - 1670178..1670504 (-) 327 WP_262608281.1 DUF771 domain-containing protein -
  MUA97_RS08165 (MUA97_08150) - 1670517..1670798 (-) 282 WP_262608282.1 hypothetical protein -
  MUA97_RS08170 (MUA97_08155) - 1670839..1671081 (-) 243 WP_262608283.1 hypothetical protein -
  MUA97_RS08175 (MUA97_08160) - 1671099..1671434 (+) 336 WP_262608284.1 hypothetical protein -
  MUA97_RS08180 (MUA97_08165) - 1671613..1671948 (+) 336 WP_262608285.1 hypothetical protein -
  MUA97_RS08185 (MUA97_08170) - 1671934..1672167 (-) 234 WP_060551355.1 hypothetical protein -
  MUA97_RS08190 (MUA97_08175) - 1672178..1672927 (-) 750 WP_262608286.1 phage antirepressor KilAC domain-containing protein -
  MUA97_RS08195 (MUA97_08180) - 1672943..1673182 (-) 240 WP_107400375.1 helix-turn-helix transcriptional regulator -
  MUA97_RS08200 (MUA97_08185) - 1673352..1674050 (+) 699 WP_262608287.1 XRE family transcriptional regulator -
  MUA97_RS08205 (MUA97_08190) - 1674067..1674228 (+) 162 WP_158224802.1 hypothetical protein -
  MUA97_RS08210 (MUA97_08195) - 1674271..1674750 (+) 480 WP_262608288.1 hypothetical protein -
  MUA97_RS08215 (MUA97_08200) - 1675722..1676375 (+) 654 WP_262569499.1 CPBP family intramembrane glutamic endopeptidase -
  MUA97_RS08220 (MUA97_08205) - 1676444..1677469 (+) 1026 WP_262608289.1 site-specific integrase -
  MUA97_RS12170 - 1679459..1680013 (-) 555 WP_316961121.1 MFS transporter -
  MUA97_RS12175 - 1680022..1680618 (-) 597 WP_316961122.1 MFS transporter -
  MUA97_RS08235 (MUA97_08220) - 1681189..1681554 (+) 366 WP_262608290.1 complement inhibitor SCIN family protein -
  MUA97_RS08240 (MUA97_08225) - 1681844..1683082 (+) 1239 WP_262608291.1 aminoacyltransferase -
  MUA97_RS08245 (MUA97_08230) - 1683486..1684346 (-) 861 WP_107368710.1 M23 family metallopeptidase -
  MUA97_RS08250 (MUA97_08235) - 1684481..1684795 (+) 315 WP_105995271.1 hypothetical protein -
  MUA97_RS08255 (MUA97_08240) - 1684905..1685405 (-) 501 WP_105995272.1 YfcE family phosphodiesterase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15717.34 Da        Isoelectric Point: 5.1936

>NTDB_id=673053 MUA97_RS08135 WP_262608276.1 1667836..1668255(-) (ssbA) [Staphylococcus agnetis strain IVB6187]
MLNRVVLVGRLTKDPEFRTTPSVVDVSTFTLAVNRNFKNKDGEQQADFINCVVFRKQAENVKNFLSKGSLAGVDGRMQSR
SYENKEGQRVYVTEVVCDSVQFLDPKNHNQQNNQQQNGQTQTGNNPFDNASIDDDDLPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=673053 MUA97_RS08135 WP_262608276.1 1667836..1668255(-) (ssbA) [Staphylococcus agnetis strain IVB6187]
ATGCTTAACAGAGTTGTATTAGTAGGACGATTAACAAAAGACCCTGAATTCAGAACGACGCCATCAGTCGTAGACGTATC
AACATTCACACTTGCGGTAAATCGCAATTTCAAAAATAAAGATGGAGAACAACAAGCTGACTTTATTAATTGCGTTGTAT
TCCGCAAGCAAGCTGAAAACGTCAAAAACTTTCTAAGTAAAGGTAGCTTAGCAGGTGTTGATGGGCGAATGCAATCACGT
AGCTACGAAAATAAAGAAGGTCAACGTGTTTATGTAACTGAAGTCGTTTGTGACAGTGTTCAATTTCTAGACCCAAAGAA
CCACAACCAACAGAATAACCAACAACAAAACGGACAAACGCAAACAGGTAATAATCCTTTTGATAACGCTAGTATCGATG
ACGACGATTTACCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.619
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

76.259

0.453
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.446

100

0.424
  ssbA Streptococcus mutans UA159

40.288

100

0.403
  ssbB/cilA Streptococcus mitis NCTC 12261

36.879

100

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

36.879

100

0.374
  ssbB/cilA Streptococcus pneumoniae Rx1

36.17

100

0.367
  ssbB/cilA Streptococcus pneumoniae D39

36.17

100

0.367
  ssbB/cilA Streptococcus pneumoniae R6

36.17

100

0.367
  ssbB/cilA Streptococcus mitis SK321

36.17

100

0.367