Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA25_RS09835 Genome accession   NZ_CP094801
Coordinates   1987095..1987523 (-) Length   142 a.a.
NCBI ID   WP_250396221.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1982095..1992523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA25_RS09785 (MUA25_09780) - 1982403..1982651 (-) 249 WP_262612296.1 phi PVL orf 51-like protein -
  MUA25_RS09790 (MUA25_09785) - 1982652..1983014 (-) 363 WP_045178946.1 SA1788 family PVL leukocidin-associated protein -
  MUA25_RS09795 (MUA25_09790) - 1983015..1983200 (-) 186 WP_145377524.1 DUF3113 family protein -
  MUA25_RS09800 (MUA25_09795) - 1983205..1983609 (-) 405 WP_262532675.1 DUF1064 domain-containing protein -
  MUA25_RS09805 (MUA25_09800) - 1983620..1983841 (-) 222 WP_001123688.1 DUF3269 family protein -
  MUA25_RS09810 (MUA25_09805) - 1983844..1984059 (-) 216 WP_089535986.1 hypothetical protein -
  MUA25_RS09815 (MUA25_09810) - 1984056..1985297 (-) 1242 WP_249525610.1 DnaB helicase C-terminal domain-containing protein -
  MUA25_RS09820 (MUA25_09815) - 1985294..1985650 (-) 357 WP_053504596.1 hypothetical protein -
  MUA25_RS09825 (MUA25_09820) - 1985650..1986414 (-) 765 WP_262612300.1 DnaD domain protein -
  MUA25_RS09830 (MUA25_09825) - 1986407..1987081 (-) 675 WP_233655493.1 putative HNHc nuclease -
  MUA25_RS09835 (MUA25_09830) ssbA 1987095..1987523 (-) 429 WP_250396221.1 single-stranded DNA-binding protein Machinery gene
  MUA25_RS09840 (MUA25_09835) - 1987523..1988161 (-) 639 WP_029549362.1 ERF family protein -
  MUA25_RS09845 (MUA25_09840) - 1988161..1988640 (-) 480 WP_000002517.1 siphovirus Gp157 family protein -
  MUA25_RS09850 (MUA25_09845) - 1988655..1988915 (-) 261 WP_252550149.1 DUF1108 family protein -
  MUA25_RS09855 (MUA25_09850) - 1988920..1989222 (-) 303 WP_262612304.1 DUF2482 family protein -
  MUA25_RS09860 (MUA25_09855) - 1989215..1989532 (-) 318 WP_000829612.1 hypothetical protein -
  MUA25_RS09865 (MUA25_09860) - 1989608..1989922 (-) 315 WP_250396440.1 XRE family transcriptional regulator -
  MUA25_RS09870 (MUA25_09865) - 1989927..1990097 (-) 171 WP_000048120.1 DUF1270 domain-containing protein -
  MUA25_RS09875 (MUA25_09870) - 1990111..1990320 (-) 210 WP_000455728.1 hypothetical protein -
  MUA25_RS09880 (MUA25_09875) - 1990345..1991046 (-) 702 WP_108914843.1 BRO family protein -
  MUA25_RS09885 (MUA25_09880) - 1991108..1991338 (+) 231 WP_000395455.1 hypothetical protein -
  MUA25_RS09890 (MUA25_09885) - 1991520..1991759 (-) 240 WP_031797045.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16047.65 Da        Isoelectric Point: 6.9806

>NTDB_id=672892 MUA25_RS09835 WP_250396221.1 1987095..1987523(-) (ssbA) [Staphylococcus aureus strain IVB6155]
MLNRVVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNKNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=672892 MUA25_RS09835 WP_250396221.1 1987095..1987523(-) (ssbA) [Staphylococcus aureus strain IVB6155]
ATGTTAAACAGAGTAGTTTTAGTAGGGCGACTAACGAAAGACCCTGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCGCTGGCAGGTGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAAAAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.302

100

0.718
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.752

79.577

0.444
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.357

100

0.437
  ssbA Streptococcus mutans UA159

42.254

100

0.423
  ssbB/cilA Streptococcus mitis NCTC 12261

41.549

100

0.415
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.549

100

0.415
  ssbB/cilA Streptococcus pneumoniae Rx1

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae D39

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae R6

40.845

100

0.408
  ssbB/cilA Streptococcus mitis SK321

40.845

100

0.408