Detailed information NTG0067278

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: SITYG_RS08785
• Genome accession: NZ_AP014880
• Coordinates: 1743237..1743632 (-)
• Length: 131 a.a.
• NCBI ID: WP_096363177.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain TYG1620
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1738237..1748632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SITYG_RS08765 (SITYG_17380)	-	1738762..1740048 (-)	1287	WP_096363175.1	ABC transporter substrate-binding protein	-
SITYG_RS08770 (SITYG_17390)	-	1740045..1740728 (-)	684	WP_003076096.1	response regulator transcription factor	-
SITYG_RS08775 (SITYG_17400)	-	1740721..1742034 (-)	1314	WP_096363176.1	sensor histidine kinase	-
SITYG_RS08780 (SITYG_17410)	-	1742034..1743020 (-)	987	WP_003075756.1	sugar ABC transporter substrate-binding protein	-
SITYG_RS08785 (SITYG_17420)	ssbB/cilA	1743237..1743632 (-)	396	WP_096363177.1	single-stranded DNA-binding protein	Machinery gene
SITYG_RS08790 (SITYG_17430)	ytpR	1743704..1744330 (-)	627	WP_003076063.1	YtpR family tRNA-binding protein	-
SITYG_RS08795 (SITYG_17440)	-	1744347..1744664 (-)	318	WP_096363178.1	thioredoxin family protein	-
SITYG_RS08800 (SITYG_17450)	-	1744661..1744948 (-)	288	WP_003074072.1	DUF4651 domain-containing protein	-
SITYG_RS08805 (SITYG_17460)	pepA	1745068..1746132 (+)	1065	WP_096363179.1	glutamyl aminopeptidase	-
SITYG_RS08810 (SITYG_17470)	-	1746269..1746619 (-)	351	WP_096363180.1	hypothetical protein	-
SITYG_RS08815	-	1746639..1746989 (-)	351	WP_096363181.1	hypothetical protein	-
SITYG_RS08825	-	1747268..1747570 (-)	303	WP_231870269.1	Imm59 family immunity protein	-
SITYG_RS08830 (SITYG_17490)	-	1747593..1747922 (-)	330	WP_096362868.1	Imm59 family immunity protein	-
SITYG_RS08835 (SITYG_17500)	-	1747926..1748255 (-)	330	WP_231870226.1	Imm59 family immunity protein	-
SITYG_RS08840	-	1748248..1748577 (-)	330	WP_096363182.1	Imm59 family immunity protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14743.70 Da
• Isoelectric Point: 5.9381

>NTDB_id=67278 SITYG_RS08785 WP_096363177.1 1743237..1743632(-) (ssbB/cilA) [Streptococcus intermedius strain TYG1620]
MYNKVILIGRLVNTPELNKTANDKSVVRATLAINRRYKGQNGEREADFVNVVVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=67278 SITYG_RS08785 WP_096363177.1 1743237..1743632(-) (ssbB/cilA) [Streptococcus intermedius strain TYG1620]
ATGTATAATAAAGTAATTTTAATTGGTCGCTTGGTTAATACACCAGAGCTAAATAAAACAGCTAATGATAAATCTGTGGT
ACGTGCAACGCTTGCCATCAACCGTCGCTATAAAGGGCAAAATGGCGAACGAGAAGCAGATTTTGTAAATGTCGTTGTTT
GGGGAAAGTTAGCTGAAACCTTAGCAAGTTATGCAACAAAAGGAAGTTTAATATCTCTTGATGGAGAACTTCGTACCCGC
CGATATGAGAAAGACGGTGTGACACATTATGTAACGGAAGTGCTTTGCAATGGCTTCCAGCTATTAGAAAGTCGTGCCCA
ACGAGCGCTTCGCGAAAATAATACAGGCGCAGATTTAGCAGATTTGGTTTTGGAAGAAGAAGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	83.206	100	0.832
ssbB/cilA	Streptococcus mitis NCTC 12261	82.443	100	0.824
ssbB/cilA	Streptococcus pneumoniae Rx1	82.443	100	0.824
ssbB/cilA	Streptococcus pneumoniae D39	82.443	100	0.824
ssbB/cilA	Streptococcus pneumoniae R6	82.443	100	0.824
ssbB/cilA	Streptococcus mitis SK321	82.443	100	0.824
ssbA	Streptococcus mutans UA159	79.389	100	0.794
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.756
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	85.496	0.527
ssb	Latilactobacillus sakei subsp. sakei 23K	45.133	86.26	0.389
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	80.916	0.389