Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA59_RS09740 Genome accession   NZ_CP094782
Coordinates   1955871..1956296 (-) Length   141 a.a.
NCBI ID   WP_000934785.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6172     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1916870..1963297 1955871..1956296 within 0


Gene organization within MGE regions


Location: 1916870..1963297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA59_RS09475 (MUA59_09450) - 1918579..1919094 (-) 516 WP_188349423.1 type 1 glutamine amidotransferase domain-containing protein -
  MUA59_RS09480 (MUA59_09455) - 1919224..1919385 (-) 162 WP_001005407.1 SE1561 family protein -
  MUA59_RS09485 (MUA59_09460) - 1919731..1919811 (+) 81 WP_262516470.1 hypothetical protein -
  MUA59_RS09490 (MUA59_09465) - 1919924..1920538 (-) 615 WP_000051376.1 hypothetical protein -
  MUA59_RS09495 (MUA59_09470) - 1920535..1920711 (-) 177 WP_000201922.1 hypothetical protein -
  MUA59_RS09500 (MUA59_09475) - 1921522..1921707 (-) 186 WP_001286805.1 hypothetical protein -
  MUA59_RS09505 (MUA59_09480) - 1921709..1921819 (-) 111 WP_000139423.1 hypothetical protein -
  MUA59_RS09510 (MUA59_09485) - 1921890..1922042 (-) 153 WP_001788502.1 hypothetical protein -
  MUA59_RS09515 (MUA59_09490) - 1922285..1923730 (-) 1446 WP_262607589.1 SH3 domain-containing protein -
  MUA59_RS09520 (MUA59_09495) - 1923711..1924148 (-) 438 WP_029549399.1 phage holin -
  MUA59_RS13900 - 1924199..1926211 (-) 2013 WP_398572693.1 phage baseplate upper protein -
  MUA59_RS09530 (MUA59_09505) - 1926224..1927993 (-) 1770 Protein_1840 glucosaminidase domain-containing protein -
  MUA59_RS09535 (MUA59_09510) - 1928584..1928883 (-) 300 WP_000466771.1 DUF2951 domain-containing protein -
  MUA59_RS09540 (MUA59_09515) - 1928924..1929097 (-) 174 WP_001800921.1 XkdX family protein -
  MUA59_RS09545 (MUA59_09520) - 1929107..1929484 (-) 378 WP_262607590.1 DUF2977 domain-containing protein -
  MUA59_RS09550 (MUA59_09525) - 1929484..1931307 (-) 1824 WP_262607591.1 phage baseplate upper protein -
  MUA59_RS09555 (MUA59_09530) - 1931307..1933205 (-) 1899 WP_262613766.1 hypothetical protein -
  MUA59_RS09560 (MUA59_09535) - 1933218..1935104 (-) 1887 WP_262607593.1 SGNH/GDSL hydrolase family protein -
  MUA59_RS09565 (MUA59_09540) - 1935115..1936056 (-) 942 WP_262536897.1 phage tail family protein -
  MUA59_RS09570 (MUA59_09545) - 1936071..1938956 (-) 2886 WP_262613768.1 terminase -
  MUA59_RS09575 (MUA59_09550) - 1938960..1939109 (-) 150 WP_000090259.1 hypothetical protein -
  MUA59_RS09580 (MUA59_09555) - 1939289..1939801 (-) 513 WP_000134336.1 tail assembly chaperone -
  MUA59_RS09585 (MUA59_09560) - 1939868..1940425 (-) 558 WP_262536903.1 phage tail protein -
  MUA59_RS09590 (MUA59_09565) - 1940426..1940851 (-) 426 WP_000270192.1 DUF3168 domain-containing protein -
  MUA59_RS09595 (MUA59_09570) - 1940864..1941022 (-) 159 Protein_1853 HK97 gp10 family phage protein -
  MUA59_RS09600 (MUA59_09575) - 1941213..1941824 (-) 612 WP_262607595.1 hypothetical protein -
  MUA59_RS09605 (MUA59_09580) - 1941955..1942209 (-) 255 Protein_1855 HK97 gp10 family phage protein -
  MUA59_RS09610 (MUA59_09585) - 1942196..1942531 (-) 336 WP_046597548.1 phage head closure protein -
  MUA59_RS09615 (MUA59_09590) - 1942543..1942893 (-) 351 WP_262607596.1 phage head-tail adapter protein -
  MUA59_RS09620 (MUA59_09595) - 1942899..1943042 (-) 144 WP_000002930.1 hypothetical protein -
  MUA59_RS09625 (MUA59_09600) - 1943054..1943968 (-) 915 WP_000235170.1 phage major capsid protein -
  MUA59_RS09630 (MUA59_09605) - 1943985..1944569 (-) 585 WP_262536906.1 DUF4355 domain-containing protein -
  MUA59_RS09635 (MUA59_09610) - 1944665..1945615 (-) 951 WP_033854646.1 phage head morphogenesis protein -
  MUA59_RS09640 (MUA59_09615) - 1945584..1947008 (-) 1425 WP_262607597.1 phage portal protein -
  MUA59_RS09645 (MUA59_09620) - 1947005..1948228 (-) 1224 WP_262613770.1 PBSX family phage terminase large subunit -
  MUA59_RS09650 (MUA59_09625) - 1948221..1948715 (-) 495 WP_000594089.1 terminase small subunit -
  MUA59_RS09655 (MUA59_09630) - 1949071..1949472 (-) 402 WP_000286968.1 hypothetical protein -
  MUA59_RS09660 (MUA59_09635) rinB 1949473..1949646 (-) 174 WP_262607598.1 transcriptional activator RinB -
  MUA59_RS09665 (MUA59_09640) - 1949643..1949849 (-) 207 WP_124375584.1 DUF1381 domain-containing protein -
  MUA59_RS09670 (MUA59_09645) - 1949846..1950091 (-) 246 WP_262536915.1 hypothetical protein -
  MUA59_RS09675 (MUA59_09650) - 1950128..1950661 (-) 534 WP_262607599.1 dUTP diphosphatase -
  MUA59_RS09680 (MUA59_09655) - 1950654..1950902 (-) 249 WP_262533962.1 DUF1024 family protein -
  MUA59_RS09685 (MUA59_09660) - 1950895..1951122 (-) 228 Protein_1871 hypothetical protein -
  MUA59_RS09690 (MUA59_09665) - 1951194..1951442 (-) 249 WP_046597483.1 phi PVL orf 51-like protein -
  MUA59_RS09695 (MUA59_09670) - 1951443..1951802 (-) 360 WP_262607601.1 SA1788 family PVL leukocidin-associated protein -
  MUA59_RS09700 (MUA59_09675) - 1951803..1951988 (-) 186 WP_262613772.1 DUF3113 family protein -
  MUA59_RS09705 (MUA59_09680) - 1951993..1952397 (-) 405 WP_262607603.1 DUF1064 domain-containing protein -
  MUA59_RS09710 (MUA59_09685) - 1952408..1952629 (-) 222 WP_262607604.1 DUF3269 family protein -
  MUA59_RS09715 (MUA59_09690) - 1952632..1952847 (-) 216 WP_001024404.1 hypothetical protein -
  MUA59_RS09720 (MUA59_09695) - 1952844..1954085 (-) 1242 WP_262607605.1 DnaB helicase C-terminal domain-containing protein -
  MUA59_RS09725 (MUA59_09700) - 1954082..1954438 (-) 357 WP_001132243.1 hypothetical protein -
  MUA59_RS09730 (MUA59_09705) - 1954438..1955190 (-) 753 WP_031916393.1 DnaD domain protein -
  MUA59_RS09735 (MUA59_09710) - 1955183..1955857 (-) 675 WP_262607606.1 putative HNHc nuclease -
  MUA59_RS09740 (MUA59_09715) ssbA 1955871..1956296 (-) 426 WP_000934785.1 single-stranded DNA-binding protein Machinery gene
  MUA59_RS09745 (MUA59_09720) - 1956296..1956934 (-) 639 WP_262613774.1 ERF family protein -
  MUA59_RS09750 (MUA59_09725) - 1956934..1957413 (-) 480 WP_000002517.1 siphovirus Gp157 family protein -
  MUA59_RS09755 (MUA59_09730) - 1957428..1957688 (-) 261 WP_000291103.1 DUF1108 family protein -
  MUA59_RS09760 (MUA59_09735) - 1957790..1957951 (-) 162 WP_000048121.1 DUF1270 family protein -
  MUA59_RS09765 (MUA59_09740) - 1957944..1958165 (-) 222 WP_000594788.1 hypothetical protein -
  MUA59_RS09770 (MUA59_09745) - 1958290..1958493 (-) 204 Protein_1888 hypothetical protein -
  MUA59_RS09775 (MUA59_09750) - 1958549..1958758 (+) 210 WP_000642492.1 hypothetical protein -
  MUA59_RS09780 (MUA59_09755) - 1958748..1958891 (-) 144 WP_000939498.1 hypothetical protein -
  MUA59_RS09785 (MUA59_09760) - 1958907..1959659 (-) 753 WP_001148595.1 phage antirepressor KilAC domain-containing protein -
  MUA59_RS09790 (MUA59_09765) - 1959661..1959846 (-) 186 WP_000933363.1 helix-turn-helix domain-containing protein -
  MUA59_RS09795 - 1960289..1960423 (+) 135 WP_001119050.1 hypothetical protein -
  MUA59_RS09800 (MUA59_09770) - 1960420..1960623 (-) 204 WP_000394020.1 hypothetical protein -
  MUA59_RS09805 (MUA59_09775) - 1960638..1960877 (-) 240 WP_126495133.1 helix-turn-helix transcriptional regulator -
  MUA59_RS09810 (MUA59_09780) - 1961069..1961401 (+) 333 WP_001260004.1 helix-turn-helix transcriptional regulator -
  MUA59_RS09815 (MUA59_09785) - 1961413..1961871 (+) 459 WP_262607608.1 ImmA/IrrE family metallo-endopeptidase -
  MUA59_RS09820 (MUA59_09790) - 1961939..1962139 (-) 201 WP_262607609.1 excisionase -
  MUA59_RS09825 (MUA59_09795) - 1962251..1963297 (+) 1047 WP_015978393.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15949.37 Da        Isoelectric Point: 4.6952

>NTDB_id=672473 MUA59_RS09740 WP_000934785.1 1955871..1956296(-) (ssbA) [Staphylococcus aureus strain IVB6172]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQGQTQTGNNPFDNTEEDFSDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=672473 MUA59_RS09740 WP_000934785.1 1955871..1956296(-) (ssbA) [Staphylococcus aureus strain IVB6172]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAGGACAAACTCAAACTGGTAATAATCCGTTCGACAATACCGAAG
AAGACTTTTCTGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

81.308

75.887

0.617
  ssb Latilactobacillus sakei subsp. sakei 23K

55.263

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.826

81.56

0.39
  ssbA Streptococcus mutans UA159

46.957

81.56

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae Rx1

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae D39

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae R6

44.915

83.688

0.376
  ssbB/cilA Streptococcus mitis SK321

44.915

83.688

0.376