Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA45_RS08275 Genome accession   NZ_CP094765
Coordinates   1672866..1673294 (-) Length   142 a.a.
NCBI ID   WP_262633660.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6215     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1667866..1678294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA45_RS08215 (MUA45_08210) - 1668023..1668271 (-) 249 WP_031941857.1 DUF1024 family protein -
  MUA45_RS08220 (MUA45_08215) - 1668264..1668527 (-) 264 WP_262518193.1 hypothetical protein -
  MUA45_RS08225 (MUA45_08220) - 1668542..1668790 (-) 249 WP_252559476.1 phi PVL orf 51-like protein -
  MUA45_RS08230 (MUA45_08225) - 1668790..1669044 (-) 255 WP_000022737.1 DUF3310 domain-containing protein -
  MUA45_RS08235 (MUA45_08230) - 1669044..1669661 (-) 618 WP_252559474.1 SA1788 family PVL leukocidin-associated protein -
  MUA45_RS08240 (MUA45_08235) - 1669662..1669847 (-) 186 WP_045178568.1 DUF3113 family protein -
  MUA45_RS08245 (MUA45_08240) - 1669852..1670256 (-) 405 WP_000049784.1 DUF1064 domain-containing protein -
  MUA45_RS08250 (MUA45_08245) - 1670267..1670488 (-) 222 WP_001123679.1 DUF3269 family protein -
  MUA45_RS08255 (MUA45_08250) - 1670501..1670659 (-) 159 WP_000628833.1 hypothetical protein -
  MUA45_RS08260 (MUA45_08255) - 1670656..1671441 (-) 786 WP_031900157.1 ATP-binding protein -
  MUA45_RS08265 (MUA45_08260) - 1671454..1672185 (-) 732 WP_045178953.1 helix-turn-helix domain-containing protein -
  MUA45_RS08270 (MUA45_08265) - 1672178..1672852 (-) 675 WP_045178956.1 putative HNHc nuclease -
  MUA45_RS08275 (MUA45_08270) ssbA 1672866..1673294 (-) 429 WP_262633660.1 single-stranded DNA-binding protein Machinery gene
  MUA45_RS08280 (MUA45_08275) - 1673294..1673932 (-) 639 WP_001043063.1 ERF family protein -
  MUA45_RS08285 (MUA45_08280) - 1673932..1674411 (-) 480 WP_045178559.1 siphovirus Gp157 family protein -
  MUA45_RS08290 (MUA45_08285) - 1674425..1674685 (-) 261 WP_000291093.1 DUF1108 family protein -
  MUA45_RS08295 (MUA45_08290) - 1674777..1675097 (-) 321 WP_000219664.1 hypothetical protein -
  MUA45_RS08300 (MUA45_08295) - 1675098..1675265 (-) 168 WP_045178556.1 DUF1270 domain-containing protein -
  MUA45_RS08305 (MUA45_08300) - 1675249..1675386 (-) 138 WP_001568566.1 hypothetical protein -
  MUA45_RS08310 (MUA45_08305) - 1675445..1675657 (+) 213 WP_000461464.1 hypothetical protein -
  MUA45_RS08315 (MUA45_08310) - 1675672..1675749 (-) 78 Protein_1636 hypothetical protein -
  MUA45_RS08320 (MUA45_08315) - 1675762..1676025 (-) 264 WP_001124185.1 helix-turn-helix domain-containing protein -
  MUA45_RS08325 (MUA45_08320) - 1676174..1676273 (-) 100 Protein_1638 hypothetical protein -
  MUA45_RS08330 (MUA45_08325) - 1676334..1676564 (+) 231 WP_000395455.1 hypothetical protein -
  MUA45_RS08335 (MUA45_08330) - 1676731..1677480 (-) 750 WP_262633661.1 phage antirepressor KilAC domain-containing protein -
  MUA45_RS08340 (MUA45_08335) - 1677541..1677783 (+) 243 WP_000498529.1 hypothetical protein -
  MUA45_RS08345 (MUA45_08340) - 1677731..1678039 (-) 309 WP_001025399.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16052.65 Da        Isoelectric Point: 5.8724

>NTDB_id=672122 MUA45_RS08275 WP_262633660.1 1672866..1673294(-) (ssbA) [Staphylococcus aureus strain IVB6215]
MLNRTVLVGRLTKDPEYRTTPDGMSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=672122 MUA45_RS08275 WP_262633660.1 1672866..1673294(-) (ssbA) [Staphylococcus aureus strain IVB6215]
ATGCTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGGATGGTATGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.613
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.958

100

0.423
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae Rx1

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae D39

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae R6

39.437

100

0.394
  ssbB/cilA Streptococcus mitis SK321

39.437

100

0.394