Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA53_RS06000 Genome accession   NZ_CP094724
Coordinates   1196419..1196730 (+) Length   103 a.a.
NCBI ID   WP_002449700.1    Uniprot ID   -
Organism   Staphylococcus hominis strain IVB6247     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1194889..1196061 1196419..1196730 flank 358


Gene organization within MGE regions


Location: 1194889..1196730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA53_RS05990 (MUA53_05975) - 1194889..1196061 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  MUA53_RS05995 (MUA53_05980) - 1196121..1196399 (+) 279 Protein_1140 type II secretion system F family protein -
  MUA53_RS06000 (MUA53_05985) comGC 1196419..1196730 (+) 312 WP_002449700.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11420.60 Da        Isoelectric Point: 9.7125

>NTDB_id=671333 MUA53_RS06000 WP_002449700.1 1196419..1196730(+) (comGC) [Staphylococcus hominis strain IVB6247]
MKKFKHKLKAFTLIEMLLVLLIISVLLILIIPNIAKQMAHIQSTGCEAQVKMVNSQIEAYTLKHNRVPNSIENLITEGFI
KQGQSSCKSGETISIKNGEAVAE

Nucleotide


Download         Length: 312 bp        

>NTDB_id=671333 MUA53_RS06000 WP_002449700.1 1196419..1196730(+) (comGC) [Staphylococcus hominis strain IVB6247]
ATGAAAAAATTCAAACATAAATTAAAAGCTTTTACTTTAATCGAGATGTTACTTGTACTATTAATAATTAGTGTTTTACT
CATTCTTATTATTCCAAACATAGCTAAACAAATGGCACATATTCAATCAACAGGATGTGAAGCACAAGTGAAAATGGTCA
ATAGTCAAATTGAAGCTTATACTTTAAAACATAATAGAGTTCCTAATTCTATTGAGAACTTAATAACTGAAGGGTTTATA
AAACAAGGGCAATCATCTTGTAAGTCTGGAGAAACTATCAGTATTAAAAATGGAGAAGCAGTTGCAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

80.392

99.029

0.796
  comGC Staphylococcus aureus MW2

80.392

99.029

0.796
  comGC/cglC Streptococcus mitis SK321

46.875

93.204

0.437
  comGC/cglC Streptococcus pneumoniae R6

45.833

93.204

0.427
  comGC/cglC Streptococcus pneumoniae TIGR4

45.833

93.204

0.427
  comGC/cglC Streptococcus pneumoniae Rx1

45.833

93.204

0.427
  comGC/cglC Streptococcus pneumoniae D39

45.833

93.204

0.427
  comYC Streptococcus mutans UA159

47.191

86.408

0.408
  comYC Streptococcus mutans UA140

47.191

86.408

0.408
  comGC Bacillus subtilis subsp. subtilis str. 168

43.158

92.233

0.398
  comYC Streptococcus gordonii str. Challis substr. CH1

46.591

85.437

0.398
  comGC/cglC Streptococcus mitis NCTC 12261

48.193

80.583

0.388
  comYC Streptococcus suis isolate S10

45.349

83.495

0.379
  comGC Lactococcus lactis subsp. cremoris KW2

48.718

75.728

0.369