Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA74_RS08150 Genome accession   NZ_CP094720
Coordinates   1645869..1646285 (-) Length   138 a.a.
NCBI ID   WP_262605807.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6233     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1640869..1651285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA74_RS08110 (MUA74_08090) - 1641121..1641807 (-) 687 WP_262609053.1 SA1788 family PVL leukocidin-associated protein -
  MUA74_RS08115 (MUA74_08095) - 1641809..1642117 (-) 309 WP_262609054.1 VRR-NUC domain-containing protein -
  MUA74_RS08120 (MUA74_08100) - 1642083..1642322 (-) 240 WP_262609055.1 hypothetical protein -
  MUA74_RS08125 (MUA74_08105) - 1642319..1643557 (-) 1239 WP_262609056.1 DnaB helicase C-terminal domain-containing protein -
  MUA74_RS08130 (MUA74_08110) - 1643550..1643903 (-) 354 WP_262605812.1 hypothetical protein -
  MUA74_RS08135 (MUA74_08115) - 1643875..1644630 (-) 756 WP_262605811.1 conserved phage C-terminal domain-containing protein -
  MUA74_RS08140 (MUA74_08120) - 1644685..1645167 (+) 483 WP_262605809.1 hypothetical protein -
  MUA74_RS08145 (MUA74_08125) - 1645183..1645857 (-) 675 WP_262609057.1 putative HNHc nuclease -
  MUA74_RS08150 (MUA74_08130) ssb 1645869..1646285 (-) 417 WP_262605807.1 single-stranded DNA-binding protein Machinery gene
  MUA74_RS08155 (MUA74_08135) - 1646285..1646956 (-) 672 WP_262609058.1 ERF family protein -
  MUA74_RS08160 (MUA74_08140) - 1646956..1647438 (-) 483 WP_262605805.1 siphovirus Gp157 family protein -
  MUA74_RS08165 (MUA74_08145) - 1647439..1647708 (-) 270 WP_262603599.1 DUF1108 family protein -
  MUA74_RS08170 (MUA74_08150) - 1647791..1647964 (-) 174 WP_262603600.1 hypothetical protein -
  MUA74_RS08175 (MUA74_08155) - 1647894..1648061 (-) 168 WP_262603601.1 hypothetical protein -
  MUA74_RS08180 (MUA74_08160) - 1648204..1648443 (+) 240 WP_262609059.1 hypothetical protein -
  MUA74_RS08185 (MUA74_08165) - 1648433..1648612 (-) 180 WP_262609060.1 hypothetical protein -
  MUA74_RS08190 (MUA74_08170) - 1648703..1649083 (+) 381 WP_262609061.1 DUF2513 domain-containing protein -
  MUA74_RS08195 (MUA74_08175) - 1649070..1649267 (-) 198 WP_262609062.1 hypothetical protein -
  MUA74_RS08200 (MUA74_08180) - 1649317..1649652 (+) 336 WP_262609063.1 hypothetical protein -
  MUA74_RS08205 (MUA74_08185) - 1649638..1649871 (-) 234 WP_262609064.1 DUF2829 domain-containing protein -
  MUA74_RS08210 (MUA74_08190) - 1649955..1650290 (+) 336 WP_241522533.1 hypothetical protein -
  MUA74_RS08215 (MUA74_08195) - 1650398..1650841 (-) 444 WP_262609065.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15651.27 Da        Isoelectric Point: 7.7800

>NTDB_id=671210 MUA74_RS08150 WP_262605807.1 1645869..1646285(-) (ssb) [Staphylococcus sp. IVB6233]
MINRVVLAGRLTKAPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVKNYLNKGNLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKNNSQSNNQPKQQGQAQNNPFDNSDDEFSDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=671210 MUA74_RS08150 WP_262605807.1 1645869..1646285(-) (ssb) [Staphylococcus sp. IVB6233]
ATGATTAATAGAGTCGTATTAGCAGGACGATTAACAAAAGCCCCCGAATTCAGAACAACGCAATCAGGCGTGGAGGTAGC
AACTTTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGATTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAAAAACTATCTAAATAAAGGAAATCTTGCAGGTGTAGATGGCCGCTTACAATCACGC
AGTTATGAAAACCAAGAAGGCCGACGTGTTTATGTAACTGAAGTCGTTTGCGACAGCGTGCAATTTTTAGAACCTAAAAA
TAATAGCCAATCTAACAATCAACCTAAACAACAAGGACAAGCGCAGAATAATCCTTTTGATAACAGTGATGACGAGTTCT
CGGATTTACCTTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

47.977

100

0.601
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.093

77.536

0.543
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

76.812

0.442
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.426

100

0.413
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.716

100

0.406
  ssbB/cilA Streptococcus mitis NCTC 12261

39.716

100

0.406
  ssbB/cilA Streptococcus pneumoniae Rx1

39.007

100

0.399
  ssbB/cilA Streptococcus pneumoniae D39

39.007

100

0.399
  ssbB/cilA Streptococcus pneumoniae R6

39.007

100

0.399
  ssbB/cilA Streptococcus mitis SK321

39.007

100

0.399
  ssbA Streptococcus mutans UA159

38.298

100

0.391