Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA48_RS04130 Genome accession   NZ_CP094719
Coordinates   823682..824098 (+) Length   138 a.a.
NCBI ID   WP_262604825.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6238     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 807283..854702 823682..824098 within 0


Gene organization within MGE regions


Location: 807283..854702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA48_RS04010 (MUA48_03980) - 807283..807783 (+) 501 WP_262604803.1 metallophosphoesterase -
  MUA48_RS04015 (MUA48_03985) - 808056..808385 (+) 330 WP_262604804.1 hypothetical protein -
  MUA48_RS04020 (MUA48_03990) - 808750..809862 (+) 1113 WP_262604805.1 hypothetical protein -
  MUA48_RS04025 (MUA48_03995) - 810037..810840 (+) 804 WP_262604806.1 LPXTG cell wall anchor domain-containing protein -
  MUA48_RS04030 (MUA48_04000) - 811383..811490 (+) 108 WP_262604807.1 putative holin-like toxin -
  MUA48_RS04035 (MUA48_04005) - 812146..813171 (-) 1026 WP_262604808.1 site-specific integrase -
  MUA48_RS04040 (MUA48_04010) - 813240..813893 (-) 654 WP_262604809.1 CPBP family intramembrane glutamic endopeptidase -
  MUA48_RS04045 (MUA48_04015) - 814171..815139 (-) 969 WP_262604810.1 DNA cytosine methyltransferase -
  MUA48_RS04050 (MUA48_04020) - 815203..815730 (-) 528 WP_262604811.1 Bsp6I family type II restriction endonuclease -
  MUA48_RS04055 (MUA48_04025) - 815912..816529 (+) 618 WP_262604812.1 hypothetical protein -
  MUA48_RS04060 (MUA48_04030) - 817000..817899 (-) 900 WP_262604813.1 HIRAN domain-containing protein -
  MUA48_RS04065 (MUA48_04035) - 817940..818401 (-) 462 WP_262604814.1 ImmA/IrrE family metallo-endopeptidase -
  MUA48_RS04070 (MUA48_04040) - 818414..818743 (-) 330 WP_262604815.1 helix-turn-helix transcriptional regulator -
  MUA48_RS04075 (MUA48_04045) - 818935..819180 (+) 246 WP_096543105.1 helix-turn-helix transcriptional regulator -
  MUA48_RS04080 (MUA48_04050) - 819195..819950 (+) 756 WP_262604816.1 phage antirepressor KilAC domain-containing protein -
  MUA48_RS04085 (MUA48_04055) - 820059..820337 (-) 279 WP_202430073.1 hypothetical protein -
  MUA48_RS04090 (MUA48_04060) - 820478..820744 (+) 267 WP_262604817.1 hypothetical protein -
  MUA48_RS04095 (MUA48_04065) - 820767..821306 (-) 540 WP_262604818.1 hypothetical protein -
  MUA48_RS04100 (MUA48_04070) - 821396..821536 (+) 141 WP_262604819.1 hypothetical protein -
  MUA48_RS04105 (MUA48_04075) - 821529..821738 (-) 210 WP_262604820.1 hypothetical protein -
  MUA48_RS04110 (MUA48_04080) - 821805..822128 (+) 324 WP_262604821.1 DUF771 domain-containing protein -
  MUA48_RS04115 (MUA48_04085) - 822384..822527 (+) 144 WP_262604822.1 hypothetical protein -
  MUA48_RS04120 (MUA48_04090) - 822529..823011 (+) 483 WP_262604823.1 siphovirus Gp157 family protein -
  MUA48_RS04125 (MUA48_04095) - 823011..823682 (+) 672 WP_262604824.1 ERF family protein -
  MUA48_RS04130 (MUA48_04100) ssbA 823682..824098 (+) 417 WP_262604825.1 single-stranded DNA-binding protein Machinery gene
  MUA48_RS04135 (MUA48_04105) - 824110..824781 (+) 672 WP_262604826.1 putative HNHc nuclease -
  MUA48_RS04140 (MUA48_04110) - 824971..825684 (+) 714 WP_262604827.1 DnaD domain protein -
  MUA48_RS04145 (MUA48_04115) - 825689..826036 (+) 348 WP_262604828.1 hypothetical protein -
  MUA48_RS04150 (MUA48_04120) - 826029..827267 (+) 1239 WP_262604829.1 DnaB helicase C-terminal domain-containing protein -
  MUA48_RS04155 (MUA48_04125) - 827264..827482 (+) 219 WP_262604830.1 hypothetical protein -
  MUA48_RS04160 (MUA48_04130) - 827469..827885 (+) 417 WP_262604831.1 RusA family crossover junction endodeoxyribonuclease -
  MUA48_RS04165 (MUA48_04135) - 827982..828155 (+) 174 WP_262604832.1 helix-turn-helix domain-containing protein -
  MUA48_RS04170 (MUA48_04140) - 828313..828531 (+) 219 WP_262604833.1 hypothetical protein -
  MUA48_RS04175 (MUA48_04145) - 828524..828676 (+) 153 WP_262604834.1 hypothetical protein -
  MUA48_RS04180 (MUA48_04150) - 828946..829368 (+) 423 WP_262604835.1 hypothetical protein -
  MUA48_RS04185 (MUA48_04155) - 829381..829602 (+) 222 WP_262604836.1 hypothetical protein -
  MUA48_RS04190 (MUA48_04160) - 829613..830008 (+) 396 WP_262604837.1 hypothetical protein -
  MUA48_RS04195 (MUA48_04165) - 830333..830518 (+) 186 WP_262604838.1 type II toxin-antitoxin system HicA family toxin -
  MUA48_RS04200 (MUA48_04170) - 830553..830948 (+) 396 WP_262604839.1 type II toxin-antitoxin system HicB family antitoxin -
  MUA48_RS04205 (MUA48_04175) - 831431..831730 (+) 300 WP_262605110.1 HNH endonuclease -
  MUA48_RS04210 (MUA48_04180) - 831856..832236 (+) 381 WP_262604840.1 hypothetical protein -
  MUA48_RS04215 (MUA48_04185) - 832223..833890 (+) 1668 WP_262604841.1 terminase TerL endonuclease subunit -
  MUA48_RS04220 (MUA48_04190) - 833910..835088 (+) 1179 WP_262604842.1 phage portal protein -
  MUA48_RS04225 (MUA48_04195) - 835045..835764 (+) 720 WP_262604843.1 head maturation protease, ClpP-related -
  MUA48_RS04230 (MUA48_04200) - 835776..836975 (+) 1200 WP_262604844.1 phage major capsid protein -
  MUA48_RS04235 (MUA48_04205) - 836993..837277 (+) 285 WP_262604845.1 phage gp6-like head-tail connector protein -
  MUA48_RS04240 (MUA48_04210) - 837261..837629 (+) 369 WP_262604846.1 hypothetical protein -
  MUA48_RS04245 (MUA48_04215) - 837619..838020 (+) 402 WP_262604847.1 hypothetical protein -
  MUA48_RS04250 (MUA48_04220) - 838026..838436 (+) 411 WP_262604848.1 hypothetical protein -
  MUA48_RS04255 (MUA48_04225) - 838449..839072 (+) 624 WP_262604849.1 major tail protein -
  MUA48_RS04260 (MUA48_04230) - 839084..839269 (+) 186 WP_262605111.1 hypothetical protein -
  MUA48_RS04265 (MUA48_04235) - 839337..839708 (+) 372 WP_096601407.1 hypothetical protein -
  MUA48_RS04270 (MUA48_04240) - 839768..839911 (+) 144 WP_168250651.1 hypothetical protein -
  MUA48_RS04275 (MUA48_04245) - 839928..844859 (+) 4932 WP_262604850.1 phage tail tape measure protein -
  MUA48_RS04280 (MUA48_04250) - 844856..846364 (+) 1509 WP_262604851.1 phage tail family protein -
  MUA48_RS04285 (MUA48_04255) - 846380..850723 (+) 4344 WP_262604852.1 phage tail spike protein -
  MUA48_RS04290 (MUA48_04260) - 850710..850877 (+) 168 WP_262604853.1 hypothetical protein -
  MUA48_RS04295 (MUA48_04265) - 850920..851222 (+) 303 WP_262604854.1 hypothetical protein -
  MUA48_RS04300 (MUA48_04270) - 851222..851713 (+) 492 WP_262560584.1 phage holin family protein -
  MUA48_RS04305 (MUA48_04275) - 851749..853218 (+) 1470 WP_262604855.1 SH3 domain-containing protein -
  MUA48_RS04310 (MUA48_04280) - 853385..854047 (+) 663 WP_262604856.1 hypothetical protein -
  MUA48_RS04315 (MUA48_04285) - 854061..854702 (+) 642 WP_262604857.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15538.21 Da        Isoelectric Point: 4.9431

>NTDB_id=671159 MUA48_RS04130 WP_262604825.1 823682..824098(+) (ssbA) [Staphylococcus sp. IVB6238]
MINRVVLVGRLTKDPEFRATQSGVEVATFTLAVNRNFKSKDGEQQADFINCVVFRKQAENVKNFLSKGSLAGVDGRMQSR
SYENKEGQRVYVTEVVCDSVQFLEPKNNSQSNNQPKQQGQAQDNPFENTSIDDDDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=671159 MUA48_RS04130 WP_262604825.1 823682..824098(+) (ssbA) [Staphylococcus sp. IVB6238]
ATGATTAATAGAGTCGTATTAGTAGGACGATTAACAAAAGACCCCGAATTCAGAGCAACGCAATCAGGCGTGGAAGTAGC
AACATTCACACTTGCGGTAAATCGCAATTTCAAAAGTAAAGATGGAGAACAACAGGCTGATTTTATCAATTGTGTTGTAT
TCCGCAAGCAAGCTGAAAATGTTAAAAACTTTTTAAGTAAAGGTAGCTTAGCAGGCGTTGATGGACGGATGCAATCACGC
AGTTACGAAAATAAAGAAGGTCAACGTGTTTATGTAACTGAAGTCGTTTGCGACAGCGTGCAATTTTTAGAACCTAAAAA
TAATAGCCAATCTAACAATCAACCTAAACAACAAGGACAAGCGCAGGATAATCCTTTTGAAAACACTAGTATCGATGATG
ACGATTTGCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.688
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.623
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

76.812

0.457
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.754

100

0.428
  ssbA Streptococcus mutans UA159

41.304

100

0.413
  ssbB/cilA Streptococcus mitis NCTC 12261

39.13

100

0.391
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.13

100

0.391
  ssbB/cilA Streptococcus pneumoniae Rx1

38.406

100

0.384
  ssbB/cilA Streptococcus pneumoniae D39

38.406

100

0.384
  ssbB/cilA Streptococcus pneumoniae R6

38.406

100

0.384
  ssbB/cilA Streptococcus mitis SK321

38.406

100

0.384