Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA26_RS07555 Genome accession   NZ_CP094717
Coordinates   1522626..1523042 (-) Length   138 a.a.
NCBI ID   WP_262613885.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6246     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1517217..1531863 1522626..1523042 within 0


Gene organization within MGE regions


Location: 1517217..1531863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA26_RS07525 (MUA26_07505) - 1517217..1517777 (+) 561 WP_262603549.1 3'-5' exonuclease -
  MUA26_RS07530 (MUA26_07510) dinB 1517772..1518839 (-) 1068 WP_262605330.1 DNA polymerase IV -
  MUA26_RS07535 (MUA26_07515) - 1519430..1520668 (-) 1239 WP_262613878.1 DnaB helicase C-terminal domain-containing protein -
  MUA26_RS07540 (MUA26_07520) - 1520661..1521008 (-) 348 WP_262604828.1 hypothetical protein -
  MUA26_RS07545 (MUA26_07525) - 1521013..1521750 (-) 738 WP_262613880.1 DnaD domain protein -
  MUA26_RS07550 (MUA26_07530) - 1521940..1522614 (-) 675 WP_262613883.1 putative HNHc nuclease -
  MUA26_RS07555 (MUA26_07535) ssb 1522626..1523042 (-) 417 WP_262613885.1 single-stranded DNA-binding protein Machinery gene
  MUA26_RS07560 (MUA26_07540) - 1523042..1523713 (-) 672 WP_262613887.1 ERF family protein -
  MUA26_RS07565 (MUA26_07545) - 1523713..1524195 (-) 483 WP_262613889.1 siphovirus Gp157 family protein -
  MUA26_RS07570 (MUA26_07550) - 1524188..1524340 (-) 153 WP_262613890.1 hypothetical protein -
  MUA26_RS07575 (MUA26_07555) - 1524519..1524686 (-) 168 WP_262603601.1 hypothetical protein -
  MUA26_RS07580 (MUA26_07560) - 1524833..1525003 (+) 171 WP_262603602.1 hypothetical protein -
  MUA26_RS07585 (MUA26_07565) - 1525015..1525305 (-) 291 WP_262603603.1 hypothetical protein -
  MUA26_RS07590 (MUA26_07570) - 1525365..1525595 (+) 231 WP_262613891.1 hypothetical protein -
  MUA26_RS07595 (MUA26_07575) - 1525570..1525746 (-) 177 WP_262613893.1 hypothetical protein -
  MUA26_RS07600 (MUA26_07580) - 1525760..1526203 (-) 444 WP_262613895.1 hypothetical protein -
  MUA26_RS07605 (MUA26_07585) - 1526218..1526967 (-) 750 WP_262613896.1 phage antirepressor KilAC domain-containing protein -
  MUA26_RS07610 (MUA26_07590) - 1526982..1527227 (-) 246 WP_262613898.1 helix-turn-helix transcriptional regulator -
  MUA26_RS07615 (MUA26_07595) - 1527419..1527748 (+) 330 WP_262613899.1 helix-turn-helix transcriptional regulator -
  MUA26_RS07620 (MUA26_07600) - 1527761..1528216 (+) 456 WP_262613901.1 ImmA/IrrE family metallo-endopeptidase -
  MUA26_RS07625 (MUA26_07605) - 1528233..1529027 (+) 795 WP_262613902.1 hypothetical protein -
  MUA26_RS07630 (MUA26_07610) - 1528999..1530120 (+) 1122 WP_262613904.1 YdcF family protein -
  MUA26_RS07635 (MUA26_07615) - 1530163..1530393 (+) 231 WP_262603608.1 hypothetical protein -
  MUA26_RS07640 (MUA26_07620) - 1530469..1531863 (+) 1395 WP_262613906.1 recombinase family protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15557.21 Da        Isoelectric Point: 5.2477

>NTDB_id=671113 MUA26_RS07555 WP_262613885.1 1522626..1523042(-) (ssb) [Staphylococcus sp. IVB6246]
MINRVVLVGRLTKDPEFRATQSGVEVATFTLAVNRNFKSKDGEQQADFINCVVFRKQAENVKNFLSKGSLAGVDGRMQSR
SYENKEGQRVYVTEVVCDSVQFLEPKNNSQSNNQPKQQGQAQNNPFDNSDDEFSDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=671113 MUA26_RS07555 WP_262613885.1 1522626..1523042(-) (ssb) [Staphylococcus sp. IVB6246]
ATGATTAATAGAGTCGTATTAGTAGGACGATTAACAAAAGACCCCGAATTCAGAGCAACGCAATCAGGCGTGGAAGTAGC
AACATTCACACTTGCGGTAAATCGCAATTTCAAAAGTAAAGATGGAGAACAACAGGCTGATTTTATCAATTGTGTTGTAT
TCCGCAAGCAAGCTGAAAATGTTAAAAACTTTTTAAGTAAAGGTAGCTTAGCAGGCGTTGATGGACGGATGCAATCACGC
AGTTACGAAAATAAAGAAGGTCAACGTGTTTATGTAACTGAAGTCGTTTGCGACAGCGTGCAATTTTTAGAACCTAAAAA
TAATAGCCAATCTAACAATCAACCTAAACAACAAGGACAAGCGCAGAATAATCCTTTTGATAACAGTGATGACGAGTTCT
CGGATTTACCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

49.711

100

0.623
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.832

77.536

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

76.812

0.457
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.262

100

0.442
  ssbA Streptococcus mutans UA159

41.844

100

0.428
  ssbB/cilA Streptococcus mitis NCTC 12261

39.716

100

0.406
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.716

100

0.406
  ssbB/cilA Streptococcus pneumoniae Rx1

39.007

100

0.399
  ssbB/cilA Streptococcus pneumoniae D39

39.007

100

0.399
  ssbB/cilA Streptococcus pneumoniae R6

39.007

100

0.399
  ssbB/cilA Streptococcus mitis SK321

39.007

100

0.399