Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ISX51_RS04060 Genome accession   NZ_CP094659
Coordinates   805200..806429 (-) Length   409 a.a.
NCBI ID   WP_281053369.1    Uniprot ID   -
Organism   Vibrio lentus strain ED252     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 800200..811429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS04025 (ISX51_04025) rimM 800413..800967 (+) 555 WP_009847609.1 ribosome maturation factor RimM -
  ISX51_RS04030 (ISX51_04030) trmD 800994..801734 (+) 741 WP_009847608.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ISX51_RS04035 (ISX51_04035) rplS 801794..802147 (+) 354 WP_009847607.1 50S ribosomal protein L19 -
  ISX51_RS04040 (ISX51_04040) yacG 802600..802797 (-) 198 WP_017056605.1 DNA gyrase inhibitor YacG -
  ISX51_RS04045 (ISX51_04045) zapD 802879..803619 (-) 741 WP_017108712.1 cell division protein ZapD -
  ISX51_RS04050 (ISX51_04050) coaE 803646..804260 (-) 615 WP_102306386.1 dephospho-CoA kinase -
  ISX51_RS04055 (ISX51_04055) pilD 804263..805132 (-) 870 WP_017106882.1 A24 family peptidase Machinery gene
  ISX51_RS04060 (ISX51_04060) pilC 805200..806429 (-) 1230 WP_281053369.1 type II secretion system F family protein Machinery gene
  ISX51_RS04065 (ISX51_04065) pilB 806444..808132 (-) 1689 WP_281053370.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ISX51_RS04070 (ISX51_04070) pilA 808134..808544 (-) 411 WP_281053617.1 pilin Machinery gene
  ISX51_RS04075 (ISX51_04075) nadC 808799..809689 (-) 891 WP_102382993.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ISX51_RS04080 (ISX51_04080) ampD 809773..810372 (+) 600 WP_281053371.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45361.31 Da        Isoelectric Point: 10.2660

>NTDB_id=670480 ISX51_RS04060 WP_281053369.1 805200..806429(-) (pilC) [Vibrio lentus strain ED252]
MSSKNKQSQLKNYHWKGINSSGKKVSGQTLALTELEVREKLKDQHIQIKKIKKKSISTLTRLTHRVKAKDITVLTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVETGTPISKAMRTASRHFDELYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVIKALIYPAMVVAVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLSLSHWMQAYSFYTAIGIGLLFL
SIQQLRQRSYSIRLSTSRLGLRFPILGAVITKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYEAAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=670480 ISX51_RS04060 WP_281053369.1 805200..806429(-) (pilC) [Vibrio lentus strain ED252]
ATGAGTAGTAAAAACAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATAAACAGCTCCGGAAAGAAAGTATCAGG
GCAGACCTTAGCATTGACGGAATTAGAGGTACGAGAAAAGCTCAAAGACCAGCATATCCAAATAAAGAAAATCAAAAAGA
AGAGCATCTCAACACTGACTCGTTTAACGCACCGAGTTAAGGCCAAAGACATTACCGTGTTAACTCGGCAACTCGCGACC
ATGTTGGCAACGGGTGTTCCTATCGTGCAGGCCATCAAGTTAGTATCAGACAACCATCGTAAAGCTGAGATGAAGTCAAT
CTTATCGCACATCTGTAAAGGCGTGGAAACAGGCACTCCGATTTCAAAAGCCATGCGCACCGCAAGCCGTCACTTTGATG
AACTGTATACCGACTTAGTTGCGACGGGAGAACTCTCAGGTAACCTAGCGCAAGTGTTTGAACGTTTAGCGACATACCGT
GAAAAGAGTGAGCAACTAAAGTCTAAGGTTATAAAGGCTCTCATCTACCCAGCTATGGTTGTAGCGGTCGCCCTTACCGT
TTCCTATTTAATGCTAACCATGGTCATCCCTGAATTTGAATCTATGTTTTCTGGTTTCGGAGCAGACTTACCTTGGTTCA
CTCAGCAAGTGCTTTCTCTTTCCCATTGGATGCAGGCCTACAGTTTCTATACTGCTATCGGTATTGGTTTATTATTCCTA
TCCATTCAGCAACTTCGTCAGCGATCTTACTCGATTCGACTTTCAACCAGTCGTCTTGGTTTACGCTTTCCTATCTTGGG
TGCGGTCATCACTAAGGCATCAATTGCAAAGTTCAGCCGGACGCTATCAACCAGTTTTAGTTCTGGGATTCCCATCTTAA
CGAGCCTAAAAACCACAGCTAAAACAGCGGGGAATCTACATTATGAAGCGGCAATTATCGAGGTTCACCGTGAAACTGCC
GCAGGCATGCCGATGTACATTGCAATGCGCAATACCAACGCCTTTCCTGAGATGGTTTTACAGATGGTGATGATTGGAGA
AGAGTCCGGAAACCTCGATGATATGCTCAATAAAGTCGCTTCAATTTACGAGTTTGAAGTAGACAACACCGTCGATAATC
TAGGTAAAATTCTCGAACCACTGATTATTGTCTTTTTGGGTACGGTTGTTGGTGGCCTTGTTGTCGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.75

97.8

0.79
  pilC Vibrio campbellii strain DS40M4

73.645

99.267

0.731
  pilC Acinetobacter baylyi ADP1

41.809

100

0.418
  pilC Acinetobacter baumannii D1279779

41.975

99.022

0.416
  pilC Legionella pneumophila strain ERS1305867

42.356

97.555

0.413
  pilG Neisseria gonorrhoeae MS11

40.852

97.555

0.399
  pilG Neisseria meningitidis 44/76-A

40.602

97.555

0.396
  pilC Pseudomonas stutzeri DSM 10701

39.604

98.778

0.391