Detailed information NTG0670479

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ISX51_RS04055
• Genome accession: NZ_CP094659
• Coordinates: 804263..805132 (-)
• Length: 289 a.a.
• NCBI ID: WP_017106882.1
• Uniprot ID: A0A1B9QDC1
• Organism: Vibrio lentus strain ED252
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 799263..810132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ISX51_RS04020 (ISX51_04020)	rpsP	800138..800386 (+)	249	WP_004735508.1	30S ribosomal protein S16	-
ISX51_RS04025 (ISX51_04025)	rimM	800413..800967 (+)	555	WP_009847609.1	ribosome maturation factor RimM	-
ISX51_RS04030 (ISX51_04030)	trmD	800994..801734 (+)	741	WP_009847608.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ISX51_RS04035 (ISX51_04035)	rplS	801794..802147 (+)	354	WP_009847607.1	50S ribosomal protein L19	-
ISX51_RS04040 (ISX51_04040)	yacG	802600..802797 (-)	198	WP_017056605.1	DNA gyrase inhibitor YacG	-
ISX51_RS04045 (ISX51_04045)	zapD	802879..803619 (-)	741	WP_017108712.1	cell division protein ZapD	-
ISX51_RS04050 (ISX51_04050)	coaE	803646..804260 (-)	615	WP_102306386.1	dephospho-CoA kinase	-
ISX51_RS04055 (ISX51_04055)	pilD	804263..805132 (-)	870	WP_017106882.1	A24 family peptidase	Machinery gene
ISX51_RS04060 (ISX51_04060)	pilC	805200..806429 (-)	1230	WP_281053369.1	type II secretion system F family protein	Machinery gene
ISX51_RS04065 (ISX51_04065)	pilB	806444..808132 (-)	1689	WP_281053370.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ISX51_RS04070 (ISX51_04070)	pilA	808134..808544 (-)	411	WP_281053617.1	pilin	Machinery gene
ISX51_RS04075 (ISX51_04075)	nadC	808799..809689 (-)	891	WP_102382993.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32511.69 Da
• Isoelectric Point: 7.6347

>NTDB_id=670479 ISX51_RS04055 WP_017106882.1 804263..805132(-) (pilD) [Vibrio lentus strain ED252]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRVI
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTAVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNVSPVSLQDSVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLLWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=670479 ISX51_RS04055 WP_017106882.1 804263..805132(-) (pilD) [Vibrio lentus strain ED252]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGTTTTCTCAA
CGTCGTCATACACCGTTTACCGATTATGATGGAACGAGAATGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCGCCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCTACCTGCCCAAAATGCAAAACCCAATTAAGGGTAATC
GACAATATTCCTGTATTAAGCTGGTTGTTCTTAAAAGGCAAATGCCATAGCTGTGCAAACCCAATCAGTGCTCGCTACCC
TTTGGTCGAACTGCTTACCGCAATCCTTTGTACCGCAGTCGCTAGTCATTTTGGTTTCAGTTATTACGCCATCGCTCTGA
TCTTTTTCACGTTTGCATTGATTACCGCAACCTTTATCGATCTCGATACCATGCTGCTGCCTGATCAAATCACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTAGCTCTGTTTAACGTCAGTCCAGTATCGCTTCAAGATTCAGTGATTGGTGCAATGGC
TGGCTACCTAGCCTTGTGGTCCGTTTATTGGCTGTTTAAGCTACTAACAGGCAAAGAAGGCATGGGTTACGGTGATTTCA
AACTTCTGGCTGCGCTTGGTGCATGGCTTGGCTGGCAACACCTACCAATGATCATTCTTTTGTCGTCGCTGGTCGGTTTG
GTTTTCGGCTTGATTCAACTTCGCTTGAAACAACAAGGCATAGATAAAGCCTTCCCATTTGGCCCATACCTCGCGATTGC
TGGTTGGGTAAGCCTATTGTGGGGCAATGACATCATGGGTTGGTATTTCACTTCTGTGCTAGGGATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A1B9QDC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.048	100	0.74
pilD	Vibrio cholerae strain A1552	69.792	99.654	0.696
pilD	Acinetobacter nosocomialis M2	50.936	92.388	0.471
pilD	Acinetobacter baumannii D1279779	50.562	92.388	0.467
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436