Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MMY79_RS17675 Genome accession   NZ_CP094657
Coordinates   3814177..3815403 (+) Length   408 a.a.
NCBI ID   WP_252610628.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3809177..3820403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS17640 (MMY79_17635) rimP 3809845..3810369 (-) 525 WP_252610620.1 ribosome maturation factor RimP -
  MMY79_RS17660 (MMY79_17655) secG 3811009..3811338 (-) 330 WP_252610622.1 preprotein translocase subunit SecG -
  MMY79_RS17665 (MMY79_17660) tpiA 3811351..3812145 (-) 795 WP_252610624.1 triose-phosphate isomerase -
  MMY79_RS17670 (MMY79_17665) pilB 3812437..3814149 (+) 1713 WP_252610626.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MMY79_RS17675 (MMY79_17670) pilC 3814177..3815403 (+) 1227 WP_252610628.1 type II secretion system F family protein Machinery gene
  MMY79_RS19430 pilD 3815403..3816263 (+) 861 WP_289781518.1 A24 family peptidase Machinery gene
  MMY79_RS17690 (MMY79_17685) coaE 3816265..3816861 (+) 597 WP_252610630.1 dephospho-CoA kinase -
  MMY79_RS17695 (MMY79_17690) - 3816858..3817772 (-) 915 WP_252610632.1 DMT family transporter -
  MMY79_RS17700 (MMY79_17695) rlmB 3817808..3818557 (-) 750 WP_005037200.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MMY79_RS17705 (MMY79_17700) - 3818660..3818986 (-) 327 WP_252610634.1 pyrimidine/purine nucleoside phosphorylase -
  MMY79_RS17710 (MMY79_17705) - 3819063..3820373 (-) 1311 WP_252610636.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44974.44 Da        Isoelectric Point: 9.9566

>NTDB_id=670442 MMY79_RS17675 WP_252610628.1 3814177..3815403(+) (pilC) [Acinetobacter sp. XS-4]
MTVKKAQLMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGIFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFILIIVIGAIIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=670442 MMY79_RS17675 WP_252610628.1 3814177..3815403(+) (pilC) [Acinetobacter sp. XS-4]
ATGACTGTCAAGAAGGCACAATTGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAAGGCGTAAAAATTAAGGGAGA
GCTTCCGGCTAAAAATATGGCTTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAAGGTATATTCAAGAAAAAGGTATCGACGCTCGATATTACGATCTTCACCCGACAACTTGCAACC
ATGATGAAAGCTGGTGTTCCACTGGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCAGCTATGCGCGAAGT
GGTACTCGGCATTAAAGGTGAAGTTGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAGTATCCTCAGCACTTCGACA
AACTGTTTTGCTCTCTTGTAGAGTCTGGCGAACAGTCTGGTGCGCTTGAAACCATGCTGGACCGCGTGGCAATTTACAAG
GAAAAAAGTGAATTGCTTAAGCAGAAAATTAAGAAAGCTATGAAATATCCAGCAACGGTTATTGTGGTTGCTGTGGTTGT
TACTATTATTTTGATGGTTAAAGTAGTTCCCGTCTTCCAAGACCTATTTTCTTCATTTGGTGCAGATTTGCCTGCCTTTA
CGCAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTCTGATTATTGTGATCGGTGCAATCATTGCC
GCATTTCTAGAAGCTAAAAAGCGTAGTAAAAAATTCCGTGATGGTTTAGACAAACTTGCCCTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGCTATAGCCGTACTTTAGCAACCACTTTTGCAGCAGGTGTCCCACTCATTG
ATGCACTTGAATCAACTGCTGGTGCAACCAACAATGTCATTTACGAACAAGCTGTAATGAAAATTCGTGAAGATGTTGCT
ACCGGTCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGTATGCTCGATAAAGTTGCAACGTACTATGAAAATGAAGTTGATAATGCCGTTGATGGCT
TAACTTCAATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTTGTAGGCGGTCTGGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGTTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

60.453

97.304

0.588
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.831

100

0.409
  pilC Thermus thermophilus HB27

37.157

98.284

0.365