Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MMY79_RS19430 Genome accession   NZ_CP094657
Coordinates   3815403..3816263 (+) Length   286 a.a.
NCBI ID   WP_289781518.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3810403..3821263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS17660 (MMY79_17655) secG 3811009..3811338 (-) 330 WP_252610622.1 preprotein translocase subunit SecG -
  MMY79_RS17665 (MMY79_17660) tpiA 3811351..3812145 (-) 795 WP_252610624.1 triose-phosphate isomerase -
  MMY79_RS17670 (MMY79_17665) pilB 3812437..3814149 (+) 1713 WP_252610626.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MMY79_RS17675 (MMY79_17670) pilC 3814177..3815403 (+) 1227 WP_252610628.1 type II secretion system F family protein Machinery gene
  MMY79_RS19430 pilD 3815403..3816263 (+) 861 WP_289781518.1 A24 family peptidase Machinery gene
  MMY79_RS17690 (MMY79_17685) coaE 3816265..3816861 (+) 597 WP_252610630.1 dephospho-CoA kinase -
  MMY79_RS17695 (MMY79_17690) - 3816858..3817772 (-) 915 WP_252610632.1 DMT family transporter -
  MMY79_RS17700 (MMY79_17695) rlmB 3817808..3818557 (-) 750 WP_005037200.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MMY79_RS17705 (MMY79_17700) - 3818660..3818986 (-) 327 WP_252610634.1 pyrimidine/purine nucleoside phosphorylase -
  MMY79_RS17710 (MMY79_17705) - 3819063..3820373 (-) 1311 WP_252610636.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32077.52 Da        Isoelectric Point: 6.4577

>NTDB_id=670452 MMY79_RS19430 WP_289781518.1 3815403..3816263(+) (pilD) [Acinetobacter sp. XS-4]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLDPEQPIIDHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLVLKGKCGHCQHPISIRYPAIELLTMVCSLIVVMVFGPTIQMLLGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPTSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=670452 MMY79_RS19430 WP_289781518.1 3815403..3816263(+) (pilD) [Acinetobacter sp. XS-4]
ATGCAAGAAATCATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCATTATTGAGCCTGTGTATTGG
TAGCTTTCTTAATGTGGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAAGAATGTCAAATGCTACTCG
ATCCTGAGCAACCCATTATTGATCATGAAAAACTGACATTAAGTAAGCCTGCTTCATCATGCCCAGAGTGCCATCAACCC
ATCCGTTGGTATCAAAATATTCCTGTTATCAGTTGGTTGGTTTTAAAAGGTAAATGTGGTCATTGCCAGCATCCTATTAG
CATTCGTTATCCAGCGATTGAACTATTAACAATGGTATGTTCACTGATTGTGGTCATGGTATTTGGCCCAACCATACAAA
TGCTGTTGGGGCTAGTCCTGACCTGGGTCCTGATTGCCCTCACCTTTATAGACTTTGATACTCAGCTGCTACCCGACCGT
TTTACCCTACCTTTAGCTGCGCTTGGTTTAGGCATTAACACCTTTAATATTTACACCTCACCCACTTCAGCCATTTGGGG
TTATCTCATTGGTTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGCATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGTTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTATTAAAATTACGCAATGATAATCAGCCCTTTGCCTTTGGGCCCTACATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATCTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

96.154

100

0.962
  pilD Acinetobacter baumannii D1279779

95.804

100

0.958
  pilD Vibrio campbellii strain DS40M4

52.747

95.455

0.503
  pilD Vibrio cholerae strain A1552

52.574

95.105

0.5
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437