Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MP622_RS12545 Genome accession   NZ_CP094643
Coordinates   2662889..2664115 (+) Length   408 a.a.
NCBI ID   WP_243791224.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2657889..2669115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS12505 (MP622_12505) rimP 2658433..2658957 (-) 525 WP_104441190.1 ribosome maturation factor RimP -
  MP622_RS12530 (MP622_12530) secG 2659739..2660068 (-) 330 WP_016168397.1 preprotein translocase subunit SecG -
  MP622_RS12535 (MP622_12535) tpiA 2660082..2660873 (-) 792 WP_243791222.1 triose-phosphate isomerase -
  MP622_RS12540 (MP622_12540) pilB 2661154..2662860 (+) 1707 WP_016168399.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MP622_RS12545 (MP622_12545) pilC 2662889..2664115 (+) 1227 WP_243791224.1 type II secretion system F family protein Machinery gene
  MP622_RS17410 pilD 2664115..2664975 (+) 861 WP_279577664.1 A24 family peptidase Machinery gene
  MP622_RS12560 (MP622_12560) coaE 2664978..2665595 (+) 618 WP_243791225.1 dephospho-CoA kinase -
  MP622_RS12565 (MP622_12565) - 2665592..2666509 (-) 918 WP_243791227.1 DMT family transporter -
  MP622_RS12570 (MP622_12570) rlmB 2666543..2667295 (-) 753 WP_243791229.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MP622_RS12575 (MP622_12575) - 2667432..2667755 (-) 324 WP_016168405.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44801.27 Da        Isoelectric Point: 9.8732

>NTDB_id=670322 MP622_RS12545 WP_243791224.1 2662889..2664115(+) (pilC) [Acinetobacter sp. PK01]
MAVKKAQMMPTFSYEGVDRKGAKIKGELPARNMALAKVTLRKQGVAIKTIREKRKNILEGLLKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFILIIAIGVLIA
VFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEQAVLKIRDDVA
TGQQLQFAMRVTDKFPAMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=670322 MP622_RS12545 WP_243791224.1 2662889..2664115(+) (pilC) [Acinetobacter sp. PK01]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAGTTATGAAGGAGTTGACCGCAAAGGGGCAAAAATTAAAGGGGA
ACTCCCTGCACGGAATATGGCTTTAGCTAAAGTCACCTTACGTAAGCAAGGAGTTGCGATTAAAACCATTCGAGAAAAAC
GCAAGAATATTCTTGAAGGTTTGCTAAAAAAGAAAGTCAGCACACTGGATATCACCATTTTCACACGCCAATTGGCCACC
ATGATGAAAGCTGGCGTACCCTTGGTGCAAAGCTTTGAAATTGTGGCTGAGGGTTTAGAAAATCCAGCAATGCGTGAAGT
CGTCCTAGGAATTAAGGGTGAAGTCGAAGGTGGTAATACCTTTGCTGGCGCGCTAAAAAAATACCCACAGTACTTTGACA
ATTTATTTTGCTCGCTGGTTGAATCTGGTGAACAATCTGGTGCACTTGAAACCATGCTAGATCGCGTCGCGATTTATAAG
GAAAAAAGTGAACTTCTGAAGCAGAAAATCAAAAAAGCCATGAAATATCCTGCCACAGTGATTGTGGTGGCGGTTATTGT
CACCATCATTTTGATGGTGAAGGTTGTTCCTGTATTCCAAGATTTATTTAGCTCATTTGGCGCTGATCTTCCAGCTTTCA
CCAAAATGGTCGTCAATATGTCAGAGTGGATGCAAAAATACTGGTTCATTCTGATTATTGCGATTGGTGTATTGATTGCT
GTATTTCTTGAAGCGAAAAAACGGAGTAAAAAATTCCGCGACTTTTTGGATAAAGCAGCATTAAAAGCCCCTATTTTTGG
TGATCTGGTTTACAAAGCCATTATCGCGCGCTACAGCCGCACTTTAGCCACCACCTTTGCTGCCGGTGTTCCACTGATTG
ATGCTTTAGAATCAACTGCTGGGGCAACCAACAACGTAGTCTATGAGCAAGCGGTACTTAAAATTCGAGATGATGTTGCA
ACTGGTCAACAATTGCAGTTTGCTATGCGGGTCACTGATAAATTCCCTGCAATGGCAGTACAAATGGTTGCCATTGGGGA
AGAATCTGGTGCACTGGATGCTATGTTAGATAAAGTTGCCACACACTATGAAAATGAAGTCGATAATGCCGTCGATGGCT
TAACTTCAATGATGGAACCCTTAATCATGGCGATTCTTGGAGTACTTGTAGGCGGGCTAGTTGTTGCTATGTACCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.196

100

0.902
  pilC Acinetobacter baylyi ADP1

84.559

100

0.846
  pilC Pseudomonas stutzeri DSM 10701

60.494

99.265

0.6
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria meningitidis 44/76-A

46.617

97.794

0.456
  pilG Neisseria gonorrhoeae MS11

46.617

97.794

0.456
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36