Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG430_RS31545 Genome accession   NZ_CP109055
Coordinates   7122363..7123049 (+) Length   228 a.a.
NCBI ID   WP_327356030.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01304     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7117363..7128049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG430_RS31535 (OG430_31530) tig 7119398..7120783 (+) 1386 WP_327356029.1 trigger factor -
  OG430_RS31540 (OG430_31535) clpP 7121711..7122316 (+) 606 WP_327359302.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG430_RS31545 (OG430_31540) clpP 7122363..7123049 (+) 687 WP_327356030.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG430_RS31550 (OG430_31545) clpX 7123250..7124536 (+) 1287 WP_327356031.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG430_RS31555 (OG430_31550) - 7124651..7125673 (-) 1023 WP_327356032.1 hypothetical protein -
  OG430_RS31560 (OG430_31555) - 7125775..7126755 (-) 981 WP_327356033.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25175.60 Da        Isoelectric Point: 4.5908

>NTDB_id=670347 OG430_RS31545 WP_327356030.1 7122363..7123049(+) (clpP) [Streptomyces sp. NBC_01304]
MNDFPGSGLYERTMAEYNGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDVSTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSAGKTSIEKIREDIERDKILTAEDALEYGLIDQIISTRKMNNASVA

Nucleotide


Download         Length: 687 bp        

>NTDB_id=670347 OG430_RS31545 WP_327356030.1 7122363..7123049(+) (clpP) [Streptomyces sp. NBC_01304]
GTGAACGATTTCCCCGGCAGCGGCCTCTACGAGCGCACCATGGCCGAGTACAACGGCCCGCGCGCCGAGTCCCGTTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCG
GACCGCGACATCTCCATCTACATCAACAGCCCGGGCGGCTCCTTCACCGCTCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCCGATGTGTCGACGGTCTGCATGGGCCAGGCGGCCTCGGCCGCCGCGGTCCTGCTCGCGGCCGGTACGCCGG
GCAAGCGCATGGCGCTCCCGAACGCCCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGTCGCGGTCAGGTCTCCGAC
CTGGAGATCGCGGCGAACGAAATCCTCCGCATGCGCGCCCAGTTGGAGGAGATGCTGGCCAAGCACTCCGCCGGCAAGAC
GTCGATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTCGAGTACGGCCTGATCG
ACCAGATCATCTCCACCCGCAAGATGAACAACGCGTCGGTCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.604

84.211

0.443
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.526

83.333

0.421
  clpP Streptococcus pyogenes JRS4

46.701

86.404

0.404
  clpP Streptococcus pyogenes MGAS315

46.701

86.404

0.404
  clpP Streptococcus mutans UA159

45.771

88.158

0.404
  clpP Streptococcus pneumoniae R6

45.455

86.842

0.395
  clpP Streptococcus pneumoniae TIGR4

45.455

86.842

0.395
  clpP Streptococcus pneumoniae D39

45.455

86.842

0.395
  clpP Streptococcus pneumoniae Rx1

45.455

86.842

0.395
  clpP Streptococcus thermophilus LMG 18311

45.178

86.404

0.39
  clpP Streptococcus thermophilus LMD-9

45.178

86.404

0.39
  clpP Lactococcus lactis subsp. cremoris KW2

44.444

86.842

0.386
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.434

86.842

0.377