Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MP622_RS17410 Genome accession   NZ_CP094643
Coordinates   2664115..2664975 (+) Length   286 a.a.
NCBI ID   WP_279577664.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2659115..2669975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS12530 (MP622_12530) secG 2659739..2660068 (-) 330 WP_016168397.1 preprotein translocase subunit SecG -
  MP622_RS12535 (MP622_12535) tpiA 2660082..2660873 (-) 792 WP_243791222.1 triose-phosphate isomerase -
  MP622_RS12540 (MP622_12540) pilB 2661154..2662860 (+) 1707 WP_016168399.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MP622_RS12545 (MP622_12545) pilC 2662889..2664115 (+) 1227 WP_243791224.1 type II secretion system F family protein Machinery gene
  MP622_RS17410 pilD 2664115..2664975 (+) 861 WP_279577664.1 A24 family peptidase Machinery gene
  MP622_RS12560 (MP622_12560) coaE 2664978..2665595 (+) 618 WP_243791225.1 dephospho-CoA kinase -
  MP622_RS12565 (MP622_12565) - 2665592..2666509 (-) 918 WP_243791227.1 DMT family transporter -
  MP622_RS12570 (MP622_12570) rlmB 2666543..2667295 (-) 753 WP_243791229.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MP622_RS12575 (MP622_12575) - 2667432..2667755 (-) 324 WP_016168405.1 pyrimidine/purine nucleoside phosphorylase -
  MP622_RS12580 (MP622_12580) recN 2668084..2669745 (+) 1662 WP_243791231.1 DNA repair protein RecN -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32113.50 Da        Isoelectric Point: 8.2558

>NTDB_id=670347 MP622_RS17410 WP_279577664.1 2664115..2664975(+) (pilD) [Acinetobacter sp. PK01]
MQDLLNYFIQNPTALYIAVGIFSLCIGSFLNVVIYRTPKMMEQEWRQDCQLLLHPEQAILDEKKLSLSQPASTCPKCKKP
IRWYENIPIISWLVLRGKCGTCSNPISIRYPLVELLTAICALTVVAVYGPTLQMLFGLIFTYTLIALTFIDFDTQLLPDR
YTLPLAALGLGINSYSIYTSPSVAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIILLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWVAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=670347 MP622_RS17410 WP_279577664.1 2664115..2664975(+) (pilD) [Acinetobacter sp. PK01]
ATGCAAGATTTACTTAATTATTTTATTCAAAACCCAACTGCACTTTATATAGCAGTTGGGATTTTTAGTTTATGCATTGG
TAGTTTTTTAAACGTTGTCATCTATCGTACTCCCAAAATGATGGAACAAGAGTGGCGTCAAGACTGTCAATTACTCCTTC
ATCCTGAACAAGCCATTTTGGATGAAAAAAAACTCAGTCTCAGCCAGCCCGCTTCAACCTGCCCGAAATGTAAGAAACCT
ATTCGTTGGTATGAGAATATCCCTATCATTAGCTGGTTAGTATTGCGTGGTAAATGCGGAACCTGTAGTAACCCGATCAG
TATCCGCTACCCTTTGGTTGAATTGCTGACTGCAATCTGTGCTTTAACAGTCGTCGCGGTCTATGGTCCCACCTTACAAA
TGTTGTTTGGATTAATTTTCACCTATACATTAATCGCACTAACATTTATTGATTTCGATACCCAACTTTTACCTGATCGT
TATACCTTGCCATTGGCAGCATTAGGACTGGGAATTAACAGCTATTCTATTTATACCTCACCAAGCGTTGCCATCTGGGG
CTATATCATTGGTTTTCTTTGTCTTTGGATTGTGTATTACCTGTTTAAAATTATTACAGGTAAAGAAGGCATGGGCTATG
GTGACTTTAAATTACTGGCTGCTTTAGGGGCGTGGATGGGTCCTTTGATGCTGCCATTGATCATACTACTGTCTTCTTTG
GTTGGAGCAATCATTGGAATCATTCTTCTCAAAATCCGTAAAGAGAATCAACCTTTTGCTTTTGGCCCCTATATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGAACAGATTATGAAAGTTTATCTAGGACAATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

80.351

99.65

0.801
  pilD Acinetobacter baumannii D1279779

80

99.65

0.797
  pilD Vibrio campbellii strain DS40M4

52.113

99.301

0.517
  pilD Vibrio cholerae strain A1552

54.275

94.056

0.51
  pilD Neisseria gonorrhoeae MS11

44.84

98.252

0.441