Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MTO68_RS01590 Genome accession   NZ_CP094620
Coordinates   343104..344339 (-) Length   411 a.a.
NCBI ID   WP_244014748.1    Uniprot ID   -
Organism   Acinetobacter sp. NyZ410     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338104..349339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO68_RS01565 (MTO68_01565) - 339349..339672 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  MTO68_RS01570 (MTO68_01570) rlmB 339833..340588 (+) 756 WP_004718355.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MTO68_RS01575 (MTO68_01575) - 340617..341528 (+) 912 WP_244014744.1 DMT family transporter -
  MTO68_RS01580 (MTO68_01580) coaE 341597..342196 (-) 600 WP_244014746.1 dephospho-CoA kinase -
  MTO68_RS01585 (MTO68_01585) pilD 342223..343104 (-) 882 WP_244015946.1 A24 family peptidase Machinery gene
  MTO68_RS01590 (MTO68_01590) pilC 343104..344339 (-) 1236 WP_244014748.1 type II secretion system F family protein Machinery gene
  MTO68_RS01595 (MTO68_01595) pilB 344367..346082 (-) 1716 WP_244014750.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MTO68_RS01600 (MTO68_01600) tpiA 346360..347154 (+) 795 WP_244014751.1 triose-phosphate isomerase -
  MTO68_RS01605 (MTO68_01605) secG 347164..347505 (+) 342 WP_244014753.1 preprotein translocase subunit SecG -
  MTO68_RS01630 (MTO68_01630) rimP 348297..348821 (+) 525 WP_004718339.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45637.17 Da        Isoelectric Point: 9.9821

>NTDB_id=670218 MTO68_RS01590 WP_244014748.1 343104..344339(-) (pilC) [Acinetobacter sp. NyZ410]
MAAKKAQMMPTFAYDGVDRKGIQIKGELPARNMALAKVTLRKQGITIKTIREKRKKYFEGLMKKGISTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENTSMREIVLGIKGEVEGGNTFAGALRKYPRYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVIVVALIVTIILMVKVVPVFQDLFSSFGADLPAFTQIVVNMSNWMQKYWFILIIFIAIWIT
AFLEARKRSKKFQNFLDRTVLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQVVMKIREDVA
TGQQLNFAMRVTNKFPSMAIQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSIIGGQ

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=670218 MTO68_RS01590 WP_244014748.1 343104..344339(-) (pilC) [Acinetobacter sp. NyZ410]
ATGGCAGCTAAAAAAGCTCAAATGATGCCTACATTTGCTTATGACGGGGTTGATCGTAAAGGGATCCAAATCAAAGGCGA
GTTACCTGCTCGCAATATGGCGCTTGCCAAAGTCACTCTACGAAAACAAGGCATCACCATAAAAACCATCCGAGAAAAAA
GGAAAAAATATTTTGAAGGTTTAATGAAAAAAGGTATTTCAACTTTAGACATTACCATTTTTACTCGTCAACTTGCCACG
ATGATGAAAGCGGGTGTGCCTTTAGTACAAAGCTTTGAAATCGTTGCAGAAGGCTTAGAAAATACCTCTATGCGTGAAAT
TGTACTGGGAATTAAAGGTGAGGTCGAAGGAGGCAATACCTTTGCAGGAGCCTTAAGAAAATATCCACGTTATTTTGACA
ACTTATTTTGCTCTTTAGTTGAATCTGGCGAACAATCAGGTGCTTTAGAAACCATGCTTGATCGTGTGGCGATCTATAAA
GAAAAAAGTGAATTACTCAAGCAAAAAATTAAAAAAGCCATGAAATACCCAATTTCTGTGATTGTAGTTGCTCTTATCGT
TACCATTATTTTAATGGTGAAGGTTGTACCTGTATTTCAGGATTTATTTAGCTCCTTTGGCGCAGATCTTCCCGCTTTTA
CCCAAATCGTGGTGAATATGTCCAATTGGATGCAAAAATATTGGTTTATTCTGATTATCTTTATTGCAATTTGGATTACG
GCCTTTTTAGAAGCAAGAAAGCGTAGTAAAAAATTTCAAAATTTTTTAGATCGGACTGTGCTTAAACTGCCTATTTTTGG
CGATCTGGTTTATAAAGCCATCATTGCACGCTATAGCCGTACCCTTGCCACAACATTTGCCGCAGGGGTACCGCTCATTG
AAGCTTTGGAATCCACCGCAGGCGCGACCAATAATGTGGTTTATGAACAAGTAGTGATGAAAATTCGTGAGGATGTTGCC
ACTGGACAGCAATTGAACTTTGCCATGCGTGTCACCAATAAATTTCCTTCTATGGCTATTCAAATGGTGGCGATTGGAGA
GGAATCTGGTGCATTGGATGCGATGTTAGATAAAGTTGCAACGCATTTTGAAAATGAAGTCGACAATGCTGTGGATGGCT
TAACCTCAATGATGGAACCGTTAATTATGGCTGTTTTAGGTGTACTTGTGGGTGGCTTAGTCATTGCAATGTATCTTCCA
ATCTTCCAAATGGGCTCAATTATTGGTGGACAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

85.539

99.27

0.849
  pilC Acinetobacter baylyi ADP1

83.088

99.27

0.825
  pilC Pseudomonas stutzeri DSM 10701

59.606

98.783

0.589
  pilC Legionella pneumophila strain ERS1305867

53.333

98.54

0.526
  pilG Neisseria gonorrhoeae MS11

45.596

93.917

0.428
  pilG Neisseria meningitidis 44/76-A

45.596

93.917

0.428
  pilC Vibrio cholerae strain A1552

42.402

99.27

0.421
  pilC Vibrio campbellii strain DS40M4

40.741

98.54

0.401
  pilC Thermus thermophilus HB27

37.226

100

0.372