Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MTO68_RS01585 Genome accession   NZ_CP094620
Coordinates   342223..343104 (-) Length   293 a.a.
NCBI ID   WP_244015946.1    Uniprot ID   -
Organism   Acinetobacter sp. NyZ410     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337223..348104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO68_RS01565 (MTO68_01565) - 339349..339672 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  MTO68_RS01570 (MTO68_01570) rlmB 339833..340588 (+) 756 WP_004718355.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MTO68_RS01575 (MTO68_01575) - 340617..341528 (+) 912 WP_244014744.1 DMT family transporter -
  MTO68_RS01580 (MTO68_01580) coaE 341597..342196 (-) 600 WP_244014746.1 dephospho-CoA kinase -
  MTO68_RS01585 (MTO68_01585) pilD 342223..343104 (-) 882 WP_244015946.1 A24 family peptidase Machinery gene
  MTO68_RS01590 (MTO68_01590) pilC 343104..344339 (-) 1236 WP_244014748.1 type II secretion system F family protein Machinery gene
  MTO68_RS01595 (MTO68_01595) pilB 344367..346082 (-) 1716 WP_244014750.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MTO68_RS01600 (MTO68_01600) tpiA 346360..347154 (+) 795 WP_244014751.1 triose-phosphate isomerase -
  MTO68_RS01605 (MTO68_01605) secG 347164..347505 (+) 342 WP_244014753.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32814.33 Da        Isoelectric Point: 8.0660

>NTDB_id=670217 MTO68_RS01585 WP_244015946.1 342223..343104(-) (pilD) [Acinetobacter sp. NyZ410]
MNMFHDLLNFLIQSPTALYLTVGILGLCVGSFLNVVIYRTPKMMEKEWRQEWHAECQLLAGSQQIVIDEEKLSLSQPAST
CPKCKTPIRWYQNIPIISWLVLRGKCASCQNPISIRYPLVELLTAVCSLTVLAVYGPTLQMVFGVLLTWVLITLTFIDFD
TQLLPDRFTLTLAAMGLGINSYHLYTTASAAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPL
IILLSSVVGAIIGIILLKIRKENVPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=670217 MTO68_RS01585 WP_244015946.1 342223..343104(-) (pilD) [Acinetobacter sp. NyZ410]
ATGAATATGTTCCATGATTTGTTAAATTTTCTGATTCAATCACCAACAGCACTCTATCTGACTGTTGGTATTTTAGGCTT
ATGTGTTGGTAGTTTTTTAAATGTAGTCATTTACCGTACTCCCAAGATGATGGAAAAAGAATGGCGACAGGAATGGCATG
CAGAATGCCAATTACTGGCAGGTTCACAACAAATTGTGATTGATGAAGAAAAACTCAGCCTGAGTCAACCAGCCTCTACC
TGTCCCAAATGCAAAACCCCAATTCGCTGGTATCAAAATATCCCCATCATCAGTTGGTTGGTTTTAAGAGGCAAATGCGC
TTCGTGTCAAAATCCAATTAGTATCCGTTACCCATTGGTTGAGCTTTTAACTGCAGTGTGTTCATTAACAGTGCTTGCTG
TTTATGGTCCAACGCTACAAATGGTTTTTGGTGTGCTACTGACATGGGTGCTGATCACACTTACATTTATTGATTTTGAC
ACTCAGTTACTTCCAGACCGCTTTACCTTAACCTTGGCGGCAATGGGTTTAGGCATTAACTCATATCATCTCTATACAAC
AGCAAGTGCTGCAATTTGGGGTTATATTATTGGCTTCCTGTGTCTTTGGATTGTCTACTATCTATTTAAAATAGTGACAG
GAAAAGAAGGTATGGGCTATGGTGACTTTAAGCTGCTTGCTGCACTTGGCGCTTGGATGGGGCCCTTGATGTTACCGTTA
ATTATCCTATTATCTTCTGTGGTGGGTGCGATCATTGGTATTATTTTACTTAAGATTCGTAAAGAAAATGTGCCTTTTGC
CTTTGGTCCTTATATTGCAATTGCAGGATGGATTGCATTTTTATGGGGTGAGCAAATTATGAAAGTATATTTGGGTCAAT
AA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(146-254)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

73.264

98.294

0.72
  pilD Acinetobacter baumannii D1279779

72.917

98.294

0.717
  pilD Vibrio campbellii strain DS40M4

54.244

92.491

0.502
  pilD Vibrio cholerae strain A1552

53.506

92.491

0.495
  pilD Neisseria gonorrhoeae MS11

45.907

95.904

0.44