Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MRY16_RS13515 Genome accession   NZ_CP094445
Coordinates   2906181..2907410 (+) Length   409 a.a.
NCBI ID   WP_243483445.1    Uniprot ID   -
Organism   Acinetobacter junii strain A2-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2901181..2912410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY16_RS13480 (MRY16_13480) rimP 2901806..2902330 (-) 525 WP_004916844.1 ribosome maturation factor RimP -
  MRY16_RS13500 (MRY16_13500) secG 2902953..2903282 (-) 330 WP_004916847.1 preprotein translocase subunit SecG -
  MRY16_RS13505 (MRY16_13505) tpiA 2903295..2904086 (-) 792 WP_004958617.1 triose-phosphate isomerase -
  MRY16_RS13510 (MRY16_13510) pilB 2904432..2906156 (+) 1725 WP_099949291.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MRY16_RS13515 (MRY16_13515) pilC 2906181..2907410 (+) 1230 WP_243483445.1 type II secretion system F family protein Machinery gene
  MRY16_RS13520 (MRY16_13520) pilD 2907423..2908283 (+) 861 WP_099949293.1 A24 family peptidase Machinery gene
  MRY16_RS13525 (MRY16_13525) coaE 2908285..2908884 (+) 600 WP_004957489.1 dephospho-CoA kinase -
  MRY16_RS13530 (MRY16_13530) - 2908881..2909792 (-) 912 WP_243483447.1 DMT family transporter -
  MRY16_RS13535 (MRY16_13535) rlmB 2909823..2910572 (-) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MRY16_RS13540 (MRY16_13540) - 2910701..2911027 (-) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44906.34 Da        Isoelectric Point: 9.9651

>NTDB_id=669550 MRY16_RS13515 WP_243483445.1 2906181..2907410(+) (pilC) [Acinetobacter junii strain A2-1]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKSEVEGGNTFAGALKKYPQYFDTLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPITVIVVAVIVTIILMVKVVPVFQNLFSSFGADLPAFTKMVVGMSQWMQEYWFILIIVVGAIIA
AFLEAKKRSKKFRDGLDKLALRLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNRFPAMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGILVGGLVVAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=669550 MRY16_RS13515 WP_243483445.1 2906181..2907410(+) (pilC) [Acinetobacter junii strain A2-1]
ATGGCAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCGAAAGTCACCTTACGTAAACAAGGCGTGACGATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACAACCTTGGATATCACGGTTTTCACACGCCAATTAGCAACA
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTTGCAGAAGGTTTAGAAAATCCATCCATGCGTGAGGT
CGTACTAGGATTAAAAAGTGAAGTTGAAGGCGGTAATACTTTCGCTGGTGCTTTAAAAAAATATCCTCAATACTTTGATA
CCTTATTTTGCTCACTCGTTGAGTCAGGGGAACAATCTGGCGCACTTGAGACCATGCTAGATCGTGTCGCTGTGTATAAA
GAAAAAAGTGAGCTCCTCAAACAAAAAATTAAAAAGGCAATGAAGTATCCAATTACGGTTATTGTAGTTGCTGTCATCGT
TACAATTATTTTGATGGTTAAAGTCGTCCCCGTTTTCCAAAATCTATTTAGTTCATTTGGTGCAGACTTACCCGCATTTA
CCAAAATGGTTGTCGGCATGTCTCAATGGATGCAAGAATATTGGTTCATTCTGATTATTGTTGTTGGTGCGATTATTGCT
GCATTCCTCGAAGCTAAAAAACGTAGTAAAAAATTTAGAGATGGCTTAGATAAACTTGCTTTAAGATTGCCGATCTTTGG
TGATCTCGTATACAAAGCAATTATTGCTCGCTACAGTCGTACACTAGCAACAACATTTGCGGCGGGCGTTCCATTAATTG
ATGCGCTTACGTCCACAGCAGGCGCAACCAATAATGTTGTTTATGAAGAAGCTGTACTTAAGATTAGAGAGGATGTTGCA
ACTGGACAACAACTTCAATTTGCTATGCGTGTTTCAAACCGCTTCCCTGCGATGGCAATTCAGATGGTCGCAATTGGTGA
AGAGTCAGGTGCACTTGATTCGATGCTAGATAAAGTCGCAACACACTATGAAAATGAGGTCGACAACGCAGTAGATGGTC
TGACTTCGATGATGGAGCCATTAATCATGGCAATCCTAGGTATTCTTGTTGGTGGATTAGTTGTCGCTATGTACCTTCCA
ATCTTCCAAATGGGTTCCGTTGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.441

99.756

0.902
  pilC Acinetobacter baylyi ADP1

85.784

99.756

0.856
  pilC Pseudomonas stutzeri DSM 10701

60.099

99.267

0.597
  pilC Legionella pneumophila strain ERS1305867

53.827

99.022

0.533
  pilG Neisseria gonorrhoeae MS11

46.482

97.311

0.452
  pilG Neisseria meningitidis 44/76-A

46.482

97.311

0.452
  pilC Vibrio cholerae strain A1552

41.667

99.756

0.416
  pilC Vibrio campbellii strain DS40M4

39.756

100

0.399
  pilC Thermus thermophilus HB27

37.157

98.044

0.364

Multiple sequence alignment