Detailed information NTG0669551

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MRY16_RS13520
• Genome accession: NZ_CP094445
• Coordinates: 2907423..2908283 (+)
• Length: 286 a.a.
• NCBI ID: WP_099949293.1
• Uniprot ID: -
• Organism: Acinetobacter junii strain A2-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2902423..2913283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MRY16_RS13500 (MRY16_13500)	secG	2902953..2903282 (-)	330	WP_004916847.1	preprotein translocase subunit SecG	-
MRY16_RS13505 (MRY16_13505)	tpiA	2903295..2904086 (-)	792	WP_004958617.1	triose-phosphate isomerase	-
MRY16_RS13510 (MRY16_13510)	pilB	2904432..2906156 (+)	1725	WP_099949291.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MRY16_RS13515 (MRY16_13515)	pilC	2906181..2907410 (+)	1230	WP_243483445.1	type II secretion system F family protein	Machinery gene
MRY16_RS13520 (MRY16_13520)	pilD	2907423..2908283 (+)	861	WP_099949293.1	A24 family peptidase	Machinery gene
MRY16_RS13525 (MRY16_13525)	coaE	2908285..2908884 (+)	600	WP_004957489.1	dephospho-CoA kinase	-
MRY16_RS13530 (MRY16_13530)	-	2908881..2909792 (-)	912	WP_243483447.1	DMT family transporter	-
MRY16_RS13535 (MRY16_13535)	rlmB	2909823..2910572 (-)	750	WP_004916859.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
MRY16_RS13540 (MRY16_13540)	-	2910701..2911027 (-)	327	WP_004958605.1	pyrimidine/purine nucleoside phosphorylase	-
MRY16_RS13545 (MRY16_13545)	recN	2911610..2913271 (+)	1662	WP_099949296.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31937.62 Da
• Isoelectric Point: 7.8116

>NTDB_id=669551 MRY16_RS13520 WP_099949293.1 2907423..2908283(+) (pilD) [Acinetobacter junii strain A2-1]
MLSLLTYFIENPTALYIAVGLISLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHPEQPIIDQSKLTLSQPVSTCPKCQTP
IKWFQNIPLISWLALRGKCGTCKNPISIRYPLIELLTMICSLIVVAVFGATIQMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFAIYTTPSAAIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM
VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=669551 MRY16_RS13520 WP_099949293.1 2907423..2908283(+) (pilD) [Acinetobacter junii strain A2-1]
ATGCTTTCTTTACTTACTTATTTTATTGAAAATCCAACTGCACTTTATATTGCAGTTGGATTAATCAGCCTGTGCATCGG
TAGTTTTTTAAATGTTGTGATCTTTCGCACTCCAAAAATGATGGAGCAAGAATGGCATCAAGAATGCCAAATGCTTTTAC
ACCCTGAACAACCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGTTTCTACCTGCCCTAAGTGTCAAACGCCA
ATTAAATGGTTCCAAAACATCCCCCTTATTAGTTGGTTAGCGCTACGCGGTAAATGTGGCACTTGCAAAAATCCAATTAG
CATTCGTTACCCGTTGATTGAACTACTTACTATGATCTGTTCATTGATCGTTGTAGCAGTATTCGGTGCAACAATTCAGA
TGCTGTTCGGCTTAATTCTAACGTGGACACTGATTGCACTCACTTTTATTGATTTTGATACACAATTACTACCTGATCGA
TTTACGCTACCTTTAGCAGCATTAGGTCTAGGTATTAATACTTTTGCAATCTATACAACGCCTAGTGCTGCGATCTGGGG
CTATTTAATAGGTTTTCTATGTCTTTGGATTGTCTATTACCTATTTAAAATCATCACGGGCAAAGAAGGCATGGGCTATG
GTGATTTTAAATTGCTTGCAGCCCTTGGTGCATGGATGGGTCCGATGATGTTACCCCTCATCGTATTACTCTCTTCTATG
GTAGGTGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGCCCTTATATTGCAAT
TGCTGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTATATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	82.168	100	0.822
pilD	Acinetobacter baumannii D1279779	81.818	100	0.818
pilD	Vibrio cholerae strain A1552	54.851	93.706	0.514
pilD	Vibrio campbellii strain DS40M4	50.936	93.357	0.476
pilD	Neisseria gonorrhoeae MS11	45.055	95.455	0.43