Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MTP24_RS13890 Genome accession   NZ_CP094441
Coordinates   3005015..3006244 (+) Length   409 a.a.
NCBI ID   WP_243531720.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. APM04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3000015..3011244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP24_RS13860 (MTP24_13860) pdhR 3000385..3001134 (-) 750 WP_243531713.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  MTP24_RS13865 (MTP24_13865) ampE 3001521..3002372 (-) 852 WP_243531715.1 beta-lactamase regulator AmpE -
  MTP24_RS13870 (MTP24_13870) ampD 3002386..3002940 (-) 555 WP_243533726.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MTP24_RS13875 (MTP24_13875) nadC 3003157..3004002 (+) 846 WP_243531718.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MTP24_RS13885 (MTP24_13885) pilA 3004530..3004946 (+) 417 WP_279388985.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MTP24_RS13890 (MTP24_13890) pilC 3005015..3006244 (+) 1230 WP_243531720.1 type II secretion system F family protein Machinery gene
  MTP24_RS13895 (MTP24_13895) pilD 3006392..3007285 (+) 894 WP_243531722.1 A24 family peptidase Machinery gene
  MTP24_RS13900 (MTP24_13900) coaE 3007303..3007935 (+) 633 WP_203985175.1 dephospho-CoA kinase -
  MTP24_RS13905 (MTP24_13905) pilB 3008068..3009744 (+) 1677 WP_243531725.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MTP24_RS13910 (MTP24_13910) yacG 3009812..3010042 (+) 231 WP_006794561.1 DNA gyrase inhibitor YacG -
  MTP24_RS13915 (MTP24_13915) - 3010124..3010615 (-) 492 WP_203985191.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44619.83 Da        Isoelectric Point: 9.7941

>NTDB_id=669471 MTP24_RS13890 WP_243531720.1 3005015..3006244(+) (pilC) [Pseudoalteromonas sp. APM04]
MKKKNEIKKGKDTFEWVGVSVRGKRLEGELTETSIALVKAQLRKQGITPSKVKRKAKPLFGARIQKITPKDIALVTRQIA
TMLMAGVPLIQAIEMIGSGSTNKSVAKLMETIGDEVKAGQPLSQALRKYPRYFDDLYCDLVASGEQSGALDKIFDRVALY
KEKSEALKSKIKKAMFYPIAVLVVALIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVIAISEFMQEYWWVALIIIVGSG
WIYKEALLKSLKLRDATDRAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEV
SSGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMTVLGVLVGGLIIAMYL
PIFQLGSVI

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=669471 MTP24_RS13890 WP_243531720.1 3005015..3006244(+) (pilC) [Pseudoalteromonas sp. APM04]
ATGAAAAAAAAGAATGAAATTAAAAAAGGAAAAGACACTTTCGAGTGGGTTGGCGTAAGTGTCAGAGGCAAACGCCTTGA
AGGCGAATTAACCGAAACCAGTATCGCGTTAGTAAAGGCGCAACTTCGCAAACAAGGTATCACACCCTCTAAAGTAAAAC
GCAAAGCCAAACCTCTATTTGGCGCACGAATACAAAAAATCACACCGAAAGATATTGCCTTAGTTACGCGTCAAATTGCC
ACTATGCTGATGGCAGGGGTACCGCTTATACAAGCTATTGAAATGATAGGTTCTGGCTCTACCAATAAAAGCGTTGCTAA
GTTAATGGAGACTATTGGCGATGAAGTAAAAGCAGGTCAGCCTTTATCACAAGCACTTAGAAAGTACCCTCGTTATTTTG
ACGACTTATATTGCGACTTAGTGGCGTCGGGCGAGCAATCGGGCGCTCTTGATAAAATATTTGATCGTGTTGCTTTATAT
AAAGAAAAATCAGAAGCGTTAAAATCAAAAATAAAAAAAGCCATGTTTTACCCTATTGCAGTTTTAGTAGTAGCGCTTAT
CGTTACCTCTATTTTGCTAATATTTGTAGTACCACAGTTTCAAGATATATTTGCAGGCTTTGGCGCTGAACTTCCCGCAT
TCACTTTGTTTGTAATTGCTATATCCGAATTTATGCAAGAGTATTGGTGGGTTGCACTAATTATAATAGTTGGTAGTGGT
TGGATTTATAAAGAGGCACTCCTAAAAAGTTTAAAGCTCAGAGATGCAACCGACAGAGCCATACTAAAACTGCCAGTTAT
TGGCATGATTTTAAATAAAGCAGCAGTCGCTCGCTATGCACGAACGCTTTCGACCACGTTTGCTGCAGGCGTACCATTGG
TTGATGCACTTGACTCTGCAGCAGGTGCCTCCGGTAACGCAGTGTACCGTTACGCTATTTTAGATATTAAAGCCGAGGTA
AGCTCGGGTAATCAAATGAACTGGGCTATGCGTAACTCCAAAATATTCCCTGATATGGTAATCCAAATGGTGGCCATTGG
TGAAGAGTCTGGCTCACTCGATGGCATGCTGGCAAAAGTAGCGACTATTTACGAGCAAGAGGTTGACGATGCGGTTGATG
GCCTTTCTAGCTTACTAGAGCCCCTTATTATGACGGTACTTGGTGTGCTTGTGGGTGGATTGATTATTGCTATGTACTTG
CCAATTTTCCAGCTAGGCTCTGTCATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.879

96.822

0.609
  pilC Acinetobacter baumannii D1279779

55.528

97.311

0.54
  pilC Acinetobacter baylyi ADP1

55.416

97.066

0.538
  pilC Legionella pneumophila strain ERS1305867

55.164

97.066

0.535
  pilC Vibrio cholerae strain A1552

44.75

97.8

0.438
  pilC Vibrio campbellii strain DS40M4

42.68

98.533

0.421
  pilG Neisseria meningitidis 44/76-A

42.494

96.088

0.408
  pilG Neisseria gonorrhoeae MS11

42.239

96.088

0.406

Multiple sequence alignment