Detailed information NTG0669472

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MTP24_RS13895
• Genome accession: NZ_CP094441
• Coordinates: 3006392..3007285 (+)
• Length: 297 a.a.
• NCBI ID: WP_243531722.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. APM04
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3001392..3012285

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MTP24_RS13865 (MTP24_13865)	ampE	3001521..3002372 (-)	852	WP_243531715.1	beta-lactamase regulator AmpE	-
MTP24_RS13870 (MTP24_13870)	ampD	3002386..3002940 (-)	555	WP_243533726.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
MTP24_RS13875 (MTP24_13875)	nadC	3003157..3004002 (+)	846	WP_243531718.1	carboxylating nicotinate-nucleotide diphosphorylase	-
MTP24_RS13885 (MTP24_13885)	pilA	3004530..3004946 (+)	417	WP_279388985.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
MTP24_RS13890 (MTP24_13890)	pilC	3005015..3006244 (+)	1230	WP_243531720.1	type II secretion system F family protein	Machinery gene
MTP24_RS13895 (MTP24_13895)	pilD	3006392..3007285 (+)	894	WP_243531722.1	A24 family peptidase	Machinery gene
MTP24_RS13900 (MTP24_13900)	coaE	3007303..3007935 (+)	633	WP_203985175.1	dephospho-CoA kinase	-
MTP24_RS13905 (MTP24_13905)	pilB	3008068..3009744 (+)	1677	WP_243531725.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MTP24_RS13910 (MTP24_13910)	yacG	3009812..3010042 (+)	231	WP_006794561.1	DNA gyrase inhibitor YacG	-
MTP24_RS13915 (MTP24_13915)	-	3010124..3010615 (-)	492	WP_203985191.1	Spy/CpxP family protein refolding chaperone	-
MTP24_RS13920 (MTP24_13920)	-	3010799..3011488 (+)	690	WP_203985199.1	response regulator	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32723.98 Da
• Isoelectric Point: 7.5095

>NTDB_id=669472 MTP24_RS13895 WP_243531722.1 3006392..3007285(+) (pilD) [Pseudoalteromonas sp. APM04]
MQSIIEVMQSQLWFYLITVGLVSLCVGSFLNVVIYRLPLMMQREWQSECRLLLDDELNTNITKPKNTSEPFNLVKPNSTC
PKCKTAIKPWQNIPIISWLILKGKCASCSNPISIRYPAVEAVTALLSLVVAYTFGATEQALLYIVITWALVALTFIDIDH
MLLPDQLTLPLVWLALIAAVGGVTITPSDAVMGAAFGYLSLWSVFWLFKLLTGKEGMGYGDFKLLALFGTLLGWQSLLTI
ILLSSVVGAIIGIALLTIQGKDKATPIPFGPYLAIAGWITLLWGNQLQSAYFNLIGY

Nucleotide

• Length: 894 bp

>NTDB_id=669472 MTP24_RS13895 WP_243531722.1 3006392..3007285(+) (pilD) [Pseudoalteromonas sp. APM04]
ATGCAAAGTATTATTGAAGTAATGCAAAGCCAACTGTGGTTTTATTTAATCACTGTTGGCTTAGTTAGTTTATGTGTAGG
CAGTTTTTTAAACGTGGTTATTTACCGTTTGCCACTTATGATGCAACGTGAATGGCAAAGCGAGTGTAGGCTATTATTAG
ATGATGAGCTAAATACTAATATAACTAAACCAAAAAATACCAGCGAGCCTTTTAATCTTGTAAAACCAAATTCTACCTGC
CCTAAGTGCAAAACGGCCATTAAGCCTTGGCAAAACATTCCTATTATTAGCTGGTTAATACTTAAGGGTAAATGCGCAAG
TTGTAGTAATCCTATCTCTATTCGTTACCCTGCAGTTGAGGCTGTTACGGCTCTATTAAGCTTAGTGGTTGCTTATACCT
TTGGCGCAACAGAACAAGCATTATTATACATAGTGATCACATGGGCACTTGTGGCACTGACCTTTATTGATATAGACCAC
ATGTTACTGCCTGACCAGCTAACTTTGCCGCTTGTTTGGCTGGCACTTATTGCCGCTGTTGGCGGAGTTACAATTACACC
AAGTGATGCCGTTATGGGTGCCGCTTTTGGTTATTTAAGCTTGTGGAGTGTATTTTGGCTATTTAAGTTATTAACCGGCA
AAGAAGGCATGGGCTATGGCGACTTTAAACTGTTAGCTTTATTTGGTACGCTATTGGGTTGGCAGTCGTTACTTACCATA
ATACTGCTTTCAAGTGTTGTTGGCGCCATTATTGGCATCGCTTTGTTAACTATTCAGGGTAAAGATAAAGCAACGCCCAT
CCCATTTGGGCCTTACCTAGCAATTGCTGGTTGGATCACGTTACTGTGGGGTAACCAATTGCAAAGCGCGTATTTTAACT
TAATTGGTTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-134)

• Type IV leader peptidase family (Peptidase_A24) (145-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.74	98.316	0.519
pilD	Acinetobacter nosocomialis M2	52.577	97.98	0.515
pilD	Acinetobacter baumannii D1279779	52.577	97.98	0.515
pilD	Vibrio campbellii strain DS40M4	51.027	98.316	0.502
pilD	Neisseria gonorrhoeae MS11	47.104	87.205	0.411