Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | GM3708_RS15755 | Genome accession | NZ_AP014815 |
| Coordinates | 3591832..3592197 (-) | Length | 121 a.a. |
| NCBI ID | WP_066348924.1 | Uniprot ID | A0A0D6AK39 |
| Organism | Geminocystis sp. NIES-3708 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3586832..3597197
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM3708_RS15740 (GM3708_3247) | - | 3587236..3588000 (-) | 765 | WP_082714161.1 | MlaE family lipid ABC transporter permease subunit | - |
| GM3708_RS15745 (GM3708_3248) | pilJ | 3588142..3590901 (-) | 2760 | WP_066348921.1 | HAMP domain-containing methyl-accepting chemotaxis protein | Machinery gene |
| GM3708_RS15750 (GM3708_3249) | - | 3590973..3591512 (-) | 540 | WP_066348922.1 | chemotaxis protein CheW | - |
| GM3708_RS15755 (GM3708_3250) | pilH | 3591832..3592197 (-) | 366 | WP_066348924.1 | response regulator transcription factor | Machinery gene |
| GM3708_RS15760 (GM3708_3251) | murA | 3592501..3593793 (-) | 1293 | WP_144439333.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| GM3708_RS15765 (GM3708_3252) | ruvX | 3594017..3594433 (-) | 417 | WP_066348929.1 | Holliday junction resolvase RuvX | - |
| GM3708_RS15770 (GM3708_3253) | - | 3594495..3595388 (-) | 894 | WP_066348931.1 | DUF4922 domain-containing protein | - |
| GM3708_RS15775 (GM3708_3254) | - | 3595438..3596175 (-) | 738 | WP_066348933.1 | DUF1997 domain-containing protein | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13433.85 Da Isoelectric Point: 6.3210
>NTDB_id=66935 GM3708_RS15755 WP_066348924.1 3591832..3592197(-) (pilH) [Geminocystis sp. NIES-3708]
MSTVLLVEDSLSTRKMISELLIKQGLKVEIAVDGVEALEILPTISPDLVVLDIVMPKMNGYEVCRNIKSNPNTKNVPVLI
CSSKGEDFDRYWGMKQGADAYIAKPFQPKELIATIRQLLKG
MSTVLLVEDSLSTRKMISELLIKQGLKVEIAVDGVEALEILPTISPDLVVLDIVMPKMNGYEVCRNIKSNPNTKNVPVLI
CSSKGEDFDRYWGMKQGADAYIAKPFQPKELIATIRQLLKG
Nucleotide
Download Length: 366 bp
>NTDB_id=66935 GM3708_RS15755 WP_066348924.1 3591832..3592197(-) (pilH) [Geminocystis sp. NIES-3708]
ATGAGTACAGTGTTGCTTGTCGAAGATAGTTTATCGACAAGAAAAATGATTAGTGAATTATTGATAAAACAAGGGTTAAA
GGTTGAAATAGCAGTTGATGGAGTAGAAGCCTTAGAAATATTACCAACGATTAGTCCTGATCTTGTGGTGTTAGATATAG
TCATGCCAAAAATGAATGGTTATGAAGTTTGTCGAAATATTAAATCAAATCCTAATACGAAGAATGTACCTGTTTTGATT
TGCTCGTCTAAAGGAGAAGATTTTGATCGCTATTGGGGTATGAAACAAGGAGCAGATGCTTATATAGCAAAACCATTTCA
ACCAAAAGAACTTATTGCCACTATTAGACAATTACTCAAAGGATAG
ATGAGTACAGTGTTGCTTGTCGAAGATAGTTTATCGACAAGAAAAATGATTAGTGAATTATTGATAAAACAAGGGTTAAA
GGTTGAAATAGCAGTTGATGGAGTAGAAGCCTTAGAAATATTACCAACGATTAGTCCTGATCTTGTGGTGTTAGATATAG
TCATGCCAAAAATGAATGGTTATGAAGTTTGTCGAAATATTAAATCAAATCCTAATACGAAGAATGTACCTGTTTTGATT
TGCTCGTCTAAAGGAGAAGATTTTGATCGCTATTGGGGTATGAAACAAGGAGCAGATGCTTATATAGCAAAACCATTTCA
ACCAAAAGAACTTATTGCCACTATTAGACAATTACTCAAAGGATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
73.333 |
99.174 |
0.727 |
| letA | Legionella pneumophila strain ERS1305867 |
37.302 |
100 |
0.388 |
| letA | Legionella pneumophila str. Paris |
37.302 |
100 |
0.388 |
| pilG | Acinetobacter baumannii strain A118 |
41.593 |
93.388 |
0.388 |
| scnR | Streptococcus mutans UA159 |
38.983 |
97.521 |
0.38 |
| chpA | Acinetobacter baumannii strain A118 |
38.793 |
95.868 |
0.372 |
| pilL-C | Synechocystis sp. PCC 6803 |
36.667 |
99.174 |
0.364 |
| ciaR | Streptococcus mutans UA159 |
36.667 |
99.174 |
0.364 |
| micA | Streptococcus pneumoniae Cp1015 |
36.667 |
99.174 |
0.364 |