Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MOW12_RS01700 Genome accession   NZ_CP094254
Coordinates   357893..359119 (-) Length   408 a.a.
NCBI ID   WP_016659656.1    Uniprot ID   V2UF65
Organism   Acinetobacter indicus strain BDT2076     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352893..364119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW12_RS01675 (MOW12_01675) - 354298..354621 (+) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -
  MOW12_RS01680 (MOW12_01680) rlmB 354727..355479 (+) 753 WP_005181769.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MOW12_RS01685 (MOW12_01685) - 355497..356417 (+) 921 WP_005181771.1 DMT family transporter -
  MOW12_RS01690 (MOW12_01690) coaE 356414..357022 (-) 609 WP_005181773.1 dephospho-CoA kinase -
  MOW12_RS01695 (MOW12_01695) pilD 357033..357893 (-) 861 WP_075175010.1 A24 family peptidase Machinery gene
  MOW12_RS01700 (MOW12_01700) pilC 357893..359119 (-) 1227 WP_016659656.1 type II secretion system F family protein Machinery gene
  MOW12_RS01705 (MOW12_01705) pilB 359150..360856 (-) 1707 WP_005181778.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MOW12_RS01710 (MOW12_01710) tpiA 361145..361936 (+) 792 WP_242911898.1 triose-phosphate isomerase -
  MOW12_RS01715 (MOW12_01715) secG 361950..362279 (+) 330 WP_005181783.1 preprotein translocase subunit SecG -
  MOW12_RS01740 (MOW12_01740) rimP 363148..363672 (+) 525 WP_005181784.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44895.36 Da        Isoelectric Point: 9.9079

>NTDB_id=668377 MOW12_RS01700 WP_016659656.1 357893..359119(-) (pilC) [Acinetobacter indicus strain BDT2076]
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSQWTQKYWFVLIIVVGFAIA
AFLEAKKRSKKFRDLLDKAALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=668377 MOW12_RS01700 WP_016659656.1 357893..359119(-) (pilC) [Acinetobacter indicus strain BDT2076]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGGAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAGTCTCAACCCTGGACATCACGATTTTTACCCGCCAACTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTGCAGAGCTTTGAAATTGTGGCCGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTACTGGGGATTAAAGGCGAAGTCGAAGGGGGTAATACCTTTGCTGGCGCACTGCGTAAATATCCGCAACATTTCGATA
ATCTGTTTTGCTCGCTGGTTGAATCGGGTGAACAGTCGGGTGCTCTAGAAACCATGCTGGACCGGGTGGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAGAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTGGTGGCCGTGATTGT
CACCATTATCCTGATGGTCAAAGTGGTACCGGTGTTTGAAGAACTCTTCACCTCTTTTGGTGCCGACTTACCGGCCTTCA
CCAAGATGGTGGTGAATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTGGTCGGCTTTGCGATTGCA
GCTTTTCTGGAAGCCAAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCCCTGAGAGCACCAATTTTTGG
TGATCTGGTGTATAAGGCGATTATTGCACGTTATAGCCGTACTTTAGCCACTACTTTTGCTGCTGGTGTACCCTTAATTG
ATGCCTTGGAATCTACCGCTGGGGCAACCAATAATGTGGTCTATGAAGAAGCCGTGATGAAAATTCGTGAAGATGTCGCC
ACCGGTCAGCAGTTGCAGTTTGCCATGCGGGTCACGGATAAATTCCCATCCATGGCCGTGCAGATGGTTGCGATTGGTGA
AGAATCCGGTGCGCTGGATGCGATGCTGGATAAAGTCGCTACTCACTACGAAAACGAAGTCGATAACGCCGTCGATGGCT
TAACCTCGATGATGGAACCACTGATTATGGCCGTTCTCGGGATTCTGGTCGGCGGTCTGGTGGTCGCGATGTATCTCCCA
ATCTTCCAAATGGGCTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V2UF65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.48

100

0.885
  pilC Acinetobacter baylyi ADP1

84.069

100

0.841
  pilC Pseudomonas stutzeri DSM 10701

60.688

99.755

0.605
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

47.99

97.549

0.468
  pilG Neisseria meningitidis 44/76-A

47.99

97.549

0.468
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

42.822

99.02

0.424
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment