Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MOW12_RS01695 Genome accession   NZ_CP094254
Coordinates   357033..357893 (-) Length   286 a.a.
NCBI ID   WP_075175010.1    Uniprot ID   -
Organism   Acinetobacter indicus strain BDT2076     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352033..362893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW12_RS01675 (MOW12_01675) - 354298..354621 (+) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -
  MOW12_RS01680 (MOW12_01680) rlmB 354727..355479 (+) 753 WP_005181769.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MOW12_RS01685 (MOW12_01685) - 355497..356417 (+) 921 WP_005181771.1 DMT family transporter -
  MOW12_RS01690 (MOW12_01690) coaE 356414..357022 (-) 609 WP_005181773.1 dephospho-CoA kinase -
  MOW12_RS01695 (MOW12_01695) pilD 357033..357893 (-) 861 WP_075175010.1 A24 family peptidase Machinery gene
  MOW12_RS01700 (MOW12_01700) pilC 357893..359119 (-) 1227 WP_016659656.1 type II secretion system F family protein Machinery gene
  MOW12_RS01705 (MOW12_01705) pilB 359150..360856 (-) 1707 WP_005181778.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MOW12_RS01710 (MOW12_01710) tpiA 361145..361936 (+) 792 WP_242911898.1 triose-phosphate isomerase -
  MOW12_RS01715 (MOW12_01715) secG 361950..362279 (+) 330 WP_005181783.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32066.36 Da        Isoelectric Point: 7.8299

>NTDB_id=668376 MOW12_RS01695 WP_075175010.1 357033..357893(-) (pilD) [Acinetobacter indicus strain BDT2076]
MQEFIHYLIQHPTALYFVVGIFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIMDESKISLSQPASTCPKCHSP
IRWYQNIPVISWLLLRGKCGQCQNPISIRYPFIELLTAVCALTVVAVFGPTLQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTSASSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGDAIMKLYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=668376 MOW12_RS01695 WP_075175010.1 357033..357893(-) (pilD) [Acinetobacter indicus strain BDT2076]
ATGCAAGAATTCATTCATTATCTGATTCAACACCCAACTGCGCTGTATTTCGTAGTTGGGATTTTTAGTTTATGTATTGG
CAGTTTTCTGAATGTGGTGATTTACCGCACGCCAAAAATGATGGAACAGGAATGGCGCAATGACTGTCAAATGCTGCTGC
ATCCTGAACAGGCCATCATGGATGAAAGTAAAATCAGCCTCAGTCAGCCAGCCTCGACCTGTCCGAAATGCCACAGCCCG
ATTCGCTGGTATCAGAATATTCCAGTAATCAGCTGGCTGCTTCTACGTGGCAAATGTGGCCAATGCCAAAACCCGATCAG
TATTCGTTATCCTTTTATTGAACTGCTGACCGCAGTGTGTGCCTTAACCGTAGTCGCGGTTTTTGGCCCGACCCTGCAAA
TGCTGTTTGGCCTGGTGTTGACCTATGTATTAATTGCCCTGACCTTTATTGATTTTGACACCCAGCTGCTGCCTGACCGC
TATACCCTCCCCCTGGCTGCACTCGGCTTGGGGGTGAACAGCTATGCCCTGTACACCTCCGCTAGCTCTGCCATTTGGGG
ATATATCATTGGCTTTTTATGTCTGTGGGTGGTGTATTACCTGTTTAAGCTGGTGACTGGCAAAGAAGGTATGGGCTATG
GCGATTTTAAATTGCTGGCCGCCTTAGGTGCCTGGATGGGCCCGCTGATGCTGCCGCTGATTGTGTTGCTATCTTCTCTG
GTTGGTGCAATCATTGGCATTATTTTGCTGAAAATCCGCAAAGAGAACCAGCCTTTTGCCTTTGGCCCTTATATTGCCAT
TGCCGGCTGGATCGCCTTTTTGTGGGGTGATGCAATCATGAAGCTTTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

79.649

99.65

0.794
  pilD Acinetobacter baumannii D1279779

79.298

99.65

0.79
  pilD Vibrio cholerae strain A1552

55.431

93.357

0.517
  pilD Vibrio campbellii strain DS40M4

53.184

93.357

0.497
  pilD Neisseria gonorrhoeae MS11

47.71

91.608

0.437

Multiple sequence alignment