Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MN200_RS14645 Genome accession   NZ_CP093968
Coordinates   2992258..2994336 (-) Length   692 a.a.
NCBI ID   WP_078425516.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2987258..2999336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS14630 (MN200_14630) - 2989724..2990563 (-) 840 WP_242759759.1 hypothetical protein -
  MN200_RS14635 (MN200_14635) aroB 2990571..2991656 (-) 1086 WP_078425514.1 3-dehydroquinate synthase -
  MN200_RS14640 (MN200_14640) - 2991687..2992169 (-) 483 WP_242759760.1 shikimate kinase -
  MN200_RS14645 (MN200_14645) pilQ 2992258..2994336 (-) 2079 WP_078425516.1 type IV pilus secretin PilQ family protein Machinery gene
  MN200_RS14650 (MN200_14650) pilP 2994356..2994883 (-) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  MN200_RS14655 (MN200_14655) pilO 2994883..2995605 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  MN200_RS14660 (MN200_14660) pilN 2995602..2996258 (-) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  MN200_RS14665 (MN200_14665) pilM 2996258..2997316 (-) 1059 WP_125273594.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75215.36 Da        Isoelectric Point: 5.0761

>NTDB_id=666102 MN200_RS14645 WP_078425516.1 2992258..2994336(-) (pilQ) [Acinetobacter sp. LUNF3]
MNNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSVNPALATPVAAARSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEEDEAKAIAQSIKLSPIQTDYIQLSYAKSADVLKLLEDSRDSKGS
ESNRTAGSESLALESLLSARGSAVSDSRTNTLIINDTQQNIDKIRRMIDLLDVAVKQVMVEARIVTASTDFSRELGIKWS
AKKLSGSPVWGGDFQPSFDLGVDLATNTAGTFNFGLLKISDYMLNLELSALQADGHGEVLSAPKVLTGDKQKAYILRGTE
IPYQTWSATEGLKTEFRAANLKLEVTPSITPDGKVQMALMVEKDSIGDITNDGLAIDTSELQTNVLVDDGETVVLGGIFD
DTKRNDYQKVPFLGDLPVVGNLFKNNVKTTIQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=666102 MN200_RS14645 WP_078425516.1 2992258..2994336(-) (pilQ) [Acinetobacter sp. LUNF3]
ATGAATAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGTGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCGCAAGCCTATCAGTTGGAACAGCCATCACGTTTGGTT
TTGGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGCATTGCGGTGGCAACGGCTGAAGCAAGTACAGTAGATGT
AACTTCAGATGCGCAGCGTTCACGTTTAACTGTAAATTTGGCTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGTGAACCCAGCGCTAGCAACACCTGTTGCTGCAGCGCGTTCAGAGCAAGGTATTTCA
AATATTGGATTCCAACGTGGTTCAGACGGCGAAGGCCAAGTTGTCATTGATTTAAAAGGTAGCAATACCCCTGTCGATGT
GAAACAACAAGGTAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCCCACTTATCACGCCGTCTCAATGTGA
ATGATTTCGCCACGCCTGTATCGACCATTGATGCACAAAACGATGGTAGTAATGGCCTGATCACAATTCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCAGAAGATAAGCTCACCATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
ACCTAAAGCACCAAGTGCTTATACGGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTAGCTGATTTTACAGGCATTAACATGGTGGCTTCGGACACAGTACAAGGCAATATTACCTTGCGCCTTAAAGATGTT
CCGTGGGATCAAGCACTTGATATTATTATGAAAACCAAGAACTTGGATAAGCGACGAAATGGTAATGTGATTTGGATTGC
ACCTGTAGCTGAGCTGATCAAATCTGAGGAAGATGAAGCCAAAGCTATCGCGCAAAGTATTAAGCTTTCACCAATACAAA
CCGATTACATTCAATTGAGTTATGCAAAATCGGCGGATGTATTGAAGTTGTTAGAGGACTCTCGTGATAGTAAAGGAAGT
GAGTCGAACCGTACAGCGGGTTCAGAGTCATTGGCTTTGGAAAGTTTATTGAGTGCTCGTGGTAGTGCAGTTTCTGATTC
GCGTACCAATACTTTAATTATTAATGATACGCAGCAAAATATTGACAAGATTCGTCGCATGATTGACTTGCTGGATGTCG
CAGTGAAACAGGTGATGGTCGAAGCGCGTATTGTCACAGCATCAACAGACTTTTCTCGCGAATTGGGGATTAAGTGGAGT
GCGAAGAAGCTTAGCGGTAGCCCGGTATGGGGCGGAGACTTCCAGCCAAGTTTTGATTTGGGTGTGGATTTAGCAACAAA
CACTGCTGGTACGTTTAACTTTGGGTTATTGAAAATTTCAGACTATATGTTGAACCTTGAGTTAAGCGCGCTTCAAGCGG
ATGGTCATGGTGAAGTCTTGTCGGCACCTAAAGTACTGACTGGTGATAAACAGAAAGCCTATATCTTGCGTGGTACAGAG
ATTCCTTATCAAACATGGAGTGCGACGGAAGGCTTAAAAACCGAATTCCGTGCGGCTAACTTAAAGTTAGAGGTGACTCC
AAGCATTACCCCTGATGGTAAAGTTCAAATGGCGCTCATGGTTGAGAAAGACTCGATTGGTGATATCACCAATGATGGTC
TTGCGATAGATACCAGTGAATTACAAACCAATGTGTTGGTAGACGATGGTGAAACCGTCGTGCTTGGTGGTATTTTTGAT
GATACGAAACGTAATGACTATCAAAAAGTACCATTCTTAGGAGATTTGCCTGTGGTGGGTAACTTATTTAAGAATAATGT
CAAAACGACGATACAAACGGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-348)

AMIN domain (AMIN)

(55-135)

Bacterial type II and III secretion system protein (Secretin)

(530-684)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

64.543

100

0.673
  pilQ Acinetobacter baumannii strain A118

64.404

100

0.672
  comQ Acinetobacter baylyi ADP1

62.921

100

0.647
  pilQ Pseudomonas aeruginosa PAK

38.873

100

0.389
  pilQ Legionella pneumophila strain Lp02

37.881

99.566

0.377
  pilQ Legionella pneumophila strain ERS1305867

38.166

97.688

0.373
  pilQ Neisseria gonorrhoeae strain FA1090

34.903

100

0.364