Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG504_RS33420 Genome accession   NZ_CP108733
Coordinates   7464964..7466007 (-) Length   347 a.a.
NCBI ID   WP_405993124.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00986     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7459964..7471007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG504_RS33405 (OG504_33390) - 7460868..7461572 (-) 705 WP_405993121.1 hypothetical protein -
  OG504_RS33410 (OG504_33395) hutH 7461709..7463241 (-) 1533 WP_405993122.1 histidine ammonia-lyase -
  OG504_RS33415 (OG504_33400) - 7463419..7464843 (-) 1425 WP_405993123.1 GH1 family beta-glucosidase -
  OG504_RS33420 (OG504_33405) cytR 7464964..7466007 (-) 1044 WP_405993124.1 LacI family DNA-binding transcriptional regulator Regulator
  OG504_RS33425 (OG504_33410) - 7466500..7467819 (+) 1320 WP_405993125.1 ABC transporter substrate-binding protein -
  OG504_RS33430 (OG504_33415) - 7468090..7469082 (+) 993 WP_405993126.1 carbohydrate ABC transporter permease -
  OG504_RS33435 (OG504_33420) - 7469097..7470017 (+) 921 WP_405993127.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36911.99 Da        Isoelectric Point: 6.5954

>NTDB_id=666102 OG504_RS33420 WP_405993124.1 7464964..7466007(-) (cytR) [Streptomyces sp. NBC_00986]
MSPAEQPPPRADVRRPTLNAVAALAGVGRGTVSRVINGSPKVSAHARAAVERAIDELGYVPNPAARSLATRRTDSVAVVV
PEGEDRLFSEPYFSGIIRGVSAQLASAQMQLLLVLTPDEKEYARLATYLSAHRVDGVLILAVHSGDTLPDRLHELAVPTV
LAGRRGHGEPLGHVRADNSGGARIAVEHLLAKGCRTIATITGPLDMDAAQARLDGYREALEGAGITADEDLIAYGDFREE
GGRAAMRELLRRRPGLDAVFAASDVMASGAVLELRASGRRVPDDVAVVGFDDSIVARHIDPPLTSVRQPLEEMGRTMASI
LLDEIAQRGGGHRQVVLPTRLVVRESA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=666102 OG504_RS33420 WP_405993124.1 7464964..7466007(-) (cytR) [Streptomyces sp. NBC_00986]
ATGAGCCCTGCCGAGCAGCCGCCCCCGCGCGCGGACGTCCGGCGCCCGACCCTCAACGCCGTGGCCGCGCTCGCCGGCGT
CGGCCGCGGCACGGTCTCCCGGGTCATCAACGGCTCCCCCAAGGTGAGCGCCCACGCCCGCGCGGCGGTGGAGCGGGCCA
TCGACGAACTCGGCTACGTCCCGAACCCCGCCGCCCGCTCCCTGGCGACCCGCCGTACCGACTCGGTCGCCGTGGTCGTC
CCCGAGGGCGAGGACCGGCTCTTCTCCGAGCCCTACTTCTCGGGGATCATCCGCGGCGTTTCGGCCCAACTCGCCAGCGC
CCAGATGCAGTTGCTGCTGGTCCTGACGCCGGACGAGAAGGAGTACGCGCGGCTGGCCACGTACCTGTCCGCACACCGGG
TGGACGGCGTGCTGATCCTCGCGGTGCACAGCGGCGACACGCTCCCCGACCGGCTGCACGAACTCGCCGTACCGACCGTG
CTCGCCGGCCGGCGCGGCCACGGGGAACCACTGGGGCACGTCCGCGCGGACAACAGCGGCGGCGCCAGGATCGCGGTCGA
GCACCTGCTGGCCAAGGGCTGCCGGACCATCGCCACCATCACGGGCCCCCTGGACATGGACGCCGCCCAGGCCCGACTCG
ACGGCTACCGCGAGGCGTTGGAGGGCGCGGGCATCACCGCCGACGAGGACCTGATCGCGTACGGCGACTTCCGCGAGGAG
GGCGGACGCGCGGCCATGCGGGAGCTGCTGCGCAGACGGCCCGGCCTCGACGCCGTCTTCGCCGCGTCCGACGTGATGGC
GTCGGGTGCCGTGCTGGAGCTGCGCGCGTCGGGCCGACGGGTGCCCGATGACGTCGCCGTCGTCGGCTTCGACGACTCGA
TCGTGGCCCGGCACATCGATCCCCCGCTGACCAGCGTCCGTCAGCCGCTGGAGGAGATGGGCCGCACCATGGCGAGCATT
CTGCTGGACGAGATCGCCCAGCGCGGCGGCGGTCACCGGCAAGTGGTGCTGCCTACGCGGCTGGTGGTGCGGGAGTCCGC
CTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(17-62)

Periplasmic binding protein-like domain (Peripla_BP_3)

(186-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.168

97.695

0.363