NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG504_RS34670	Genome accession	NZ_CP108733
Coordinates	7746549..7747151 (+)	Length	200 a.a.
NCBI ID	WP_033285987.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00986
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 7741549..7752151

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG504_RS34640 (OG504_34625)	-	7742376..7743482 (-)	1107	WP_405993326.1	acyltransferase family protein	-
OG504_RS34645 (OG504_34630)	-	7743786..7743980 (+)	195	WP_026151384.1	hypothetical protein	-
OG504_RS34650 (OG504_34635)	-	7743992..7744225 (+)	234	WP_405993327.1	hypothetical protein	-
OG504_RS34665 (OG504_34650)	tig	7744817..7746181 (+)	1365	WP_405993328.1	trigger factor	-
OG504_RS34670 (OG504_34655)	clpP	7746549..7747151 (+)	603	WP_033285987.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG504_RS34675 (OG504_34660)	clpP	7747201..7747881 (+)	681	WP_405839990.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG504_RS34680 (OG504_34665)	clpX	7748042..7749328 (+)	1287	WP_033285988.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG504_RS34685 (OG504_34670)	-	7749422..7750426 (-)	1005	WP_405993329.1	hypothetical protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 21139.05 Da Isoelectric Point: 4.6747

                                >NTDB_id=666103 OG504_RS34670 WP_033285987.1 7746549..7747151(+) (clpP) [Streptomyces sp. NBC_00986]

MPTAAGEPSIGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI

KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQSIEQ

ITRDSDRDRWFDALEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide

Download Length: 603 bp

                                >NTDB_id=666103 OG504_RS34670 WP_033285987.1 7746549..7747151(+) (clpP) [Streptomyces sp. NBC_00986]

ATGCCTACAGCCGCCGGCGAGCCCTCTATCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGTGAGCGGATCAT

CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTCCTCCTTGCCGCCGACCCCGACA

AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC

AAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCCATGGGCCAGTTCCTTCTCAGCGCGGGTACCCCGGGCAA

GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTGGCCGGTTCGGCCTCCGACATCAAGA

TCCACGCGGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACGTCCCAGCACACGGGCCAGAGCATCGAGCAG

ATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCGCTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTGATTCC

CACGGCCGCCGGTATGCCGGGCGGCGGCGGTACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	56.15	93.5	0.525
clpP	Lactococcus lactis subsp. cremoris KW2	52.91	94.5	0.5
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.381	94.5	0.495
clpP	Streptococcus mutans UA159	52.381	94.5	0.495
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.579	95	0.49
clpP	Streptococcus pyogenes MGAS315	49.735	94.5	0.47
clpP	Streptococcus pyogenes JRS4	49.735	94.5	0.47
clpP	Streptococcus thermophilus LMG 18311	49.206	94.5	0.465
clpP	Streptococcus thermophilus LMD-9	49.206	94.5	0.465
clpP	Streptococcus pneumoniae Rx1	48.677	94.5	0.46
clpP	Streptococcus pneumoniae D39	48.677	94.5	0.46
clpP	Streptococcus pneumoniae R6	48.677	94.5	0.46
clpP	Streptococcus pneumoniae TIGR4	48.677	94.5	0.46

Detailed information NTG0666103