Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MN200_RS14660 Genome accession   NZ_CP093968
Coordinates   2995602..2996258 (-) Length   218 a.a.
NCBI ID   WP_005401354.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2990602..3001258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS14640 (MN200_14640) - 2991687..2992169 (-) 483 WP_242759760.1 shikimate kinase -
  MN200_RS14645 (MN200_14645) pilQ 2992258..2994336 (-) 2079 WP_078425516.1 type IV pilus secretin PilQ family protein Machinery gene
  MN200_RS14650 (MN200_14650) pilP 2994356..2994883 (-) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  MN200_RS14655 (MN200_14655) pilO 2994883..2995605 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  MN200_RS14660 (MN200_14660) pilN 2995602..2996258 (-) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  MN200_RS14665 (MN200_14665) pilM 2996258..2997316 (-) 1059 WP_125273594.1 pilus assembly protein PilM Machinery gene
  MN200_RS14670 (MN200_14670) ponA 2997482..3000010 (+) 2529 WP_242759762.1 penicillin-binding protein PBP1a -
  MN200_RS14675 (MN200_14675) - 3000042..3000848 (-) 807 WP_058870422.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24226.65 Da        Isoelectric Point: 5.1439

>NTDB_id=666105 MN200_RS14660 WP_005401354.1 2995602..2996258(-) (pilN) [Acinetobacter sp. LUNF3]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPDATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=666105 MN200_RS14660 WP_005401354.1 2995602..2996258(-) (pilN) [Acinetobacter sp. LUNF3]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTAGCTTGGTTCTTTTACAGTCAAAAACTGGAAGATCAAGAACAAGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTCCAATTAAAGTCATTGGAAGGTCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGTTTGCAAGGTCAACGCCCTGTGGCTGTACGTTTGGTCGATGAAATGGTACG
TGTTACACCAAGTAATATGTACATTACTAAGTTTGTGCGCACAGGTGATAAATTTACCATTGAAGGGAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGAAATCTCGAAGCATCTGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGCTCCATCGTGCCACGTGTTGAAGAAACCTATGGCACATTTGTGGTCACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTGATGCGACGACACCTGAAGCAGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.856

95.872

0.67
  comN Acinetobacter baylyi ADP1

73.604

90.367

0.665