Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG504_RS34675 Genome accession   NZ_CP108733
Coordinates   7747201..7747881 (+) Length   226 a.a.
NCBI ID   WP_405839990.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00986     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7742201..7752881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG504_RS34640 (OG504_34625) - 7742376..7743482 (-) 1107 WP_405993326.1 acyltransferase family protein -
  OG504_RS34645 (OG504_34630) - 7743786..7743980 (+) 195 WP_026151384.1 hypothetical protein -
  OG504_RS34650 (OG504_34635) - 7743992..7744225 (+) 234 WP_405993327.1 hypothetical protein -
  OG504_RS34665 (OG504_34650) tig 7744817..7746181 (+) 1365 WP_405993328.1 trigger factor -
  OG504_RS34670 (OG504_34655) clpP 7746549..7747151 (+) 603 WP_033285987.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG504_RS34675 (OG504_34660) clpP 7747201..7747881 (+) 681 WP_405839990.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG504_RS34680 (OG504_34665) clpX 7748042..7749328 (+) 1287 WP_033285988.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG504_RS34685 (OG504_34670) - 7749422..7750426 (-) 1005 WP_405993329.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25009.41 Da        Isoelectric Point: 4.5670

>NTDB_id=666104 OG504_RS34675 WP_405839990.1 7747201..7747881(+) (clpP) [Streptomyces sp. NBC_00986]
MNDFPGTGLYDRARAEYTAPAAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPLDKIREDIERDKILTAEDALAYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=666104 OG504_RS34675 WP_405839990.1 7747201..7747881(+) (clpP) [Streptomyces sp. NBC_00986]
GTGAACGACTTCCCCGGCACCGGCCTGTACGACCGCGCACGCGCCGAATACACGGCTCCCGCCGCCGAGTCCCGTTACGT
GATCCCGCGTTTCGTCGAGCGCACCTCGCAGGGTGTCCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGCGACATCTCGATCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCCGCGTCCGCCGCCGCCGTCCTGCTGGCGGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACGGGCCGGGGCCAGGTCTCCGAC
CTCGAGATCGCGGCCAACGAGATCCTCCGCATGCGTGCCCAGCTGGAGGACATGCTGGCCAAGCACTCGACGACCCCGCT
GGACAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

44.724

88.053

0.394
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Streptococcus thermophilus LMG 18311

45.128

86.283

0.389
  clpP Streptococcus thermophilus LMD-9

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376