Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   MN200_RS14655 Genome accession   NZ_CP093968
Coordinates   2994883..2995605 (-) Length   240 a.a.
NCBI ID   WP_004691497.1    Uniprot ID   A0A380U8X3
Organism   Acinetobacter sp. LUNF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2989883..3000605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS14635 (MN200_14635) aroB 2990571..2991656 (-) 1086 WP_078425514.1 3-dehydroquinate synthase -
  MN200_RS14640 (MN200_14640) - 2991687..2992169 (-) 483 WP_242759760.1 shikimate kinase -
  MN200_RS14645 (MN200_14645) pilQ 2992258..2994336 (-) 2079 WP_078425516.1 type IV pilus secretin PilQ family protein Machinery gene
  MN200_RS14650 (MN200_14650) pilP 2994356..2994883 (-) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  MN200_RS14655 (MN200_14655) pilO 2994883..2995605 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  MN200_RS14660 (MN200_14660) pilN 2995602..2996258 (-) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  MN200_RS14665 (MN200_14665) pilM 2996258..2997316 (-) 1059 WP_125273594.1 pilus assembly protein PilM Machinery gene
  MN200_RS14670 (MN200_14670) ponA 2997482..3000010 (+) 2529 WP_242759762.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27004.43 Da        Isoelectric Point: 4.9937

>NTDB_id=666104 MN200_RS14655 WP_004691497.1 2994883..2995605(-) (pilO) [Acinetobacter sp. LUNF3]
MSRDEFEELTSENHAVTKKKMTVDKFFQQFNTLDPNNYGSWPFSVKLTCWIFIILVIGALGYFVVIKPKLDAISNAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLEPEIRQEFFIEQP
ISIEATGDYHSFGSFVSGIAALPRIVTLHDFDISASSNNEKKTDIPQISYSVKAKTYRYVGATAAASVENTAKADAGGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=666104 MN200_RS14655 WP_004691497.1 2994883..2995605(-) (pilO) [Acinetobacter sp. LUNF3]
ATGAGTCGCGATGAATTTGAAGAATTAACATCAGAAAACCATGCTGTAACCAAGAAGAAAATGACGGTTGATAAGTTTTT
TCAACAGTTTAATACCTTAGATCCAAACAATTACGGTAGTTGGCCCTTTTCAGTCAAATTGACTTGTTGGATCTTTATCA
TTTTAGTGATTGGGGCTTTGGGTTATTTTGTCGTGATTAAGCCGAAACTTGATGCGATTTCAAATGCACATGCACAAGAA
CAAAATTTACTGAATGAGTTTCGTGAAAAAGATTCAAAATTACGTAATTTGCAGCAATATCAAGCGCAATTGCAAGAAAT
GGAAGCCAATTTTAATCAGCAGTTAGAACAGCTGCCGAAAGAAACTGAAATTCCTGGTTTGGTTGAAGACATTAACGTGA
GCGGCGTAAATTCTGGATTAAAATTTAAAAATATTCGTTTAGAGCCAGAAATTCGCCAAGAGTTCTTTATCGAACAGCCG
ATTTCTATTGAAGCGACGGGTGATTATCATTCTTTTGGTTCATTTGTCAGTGGAATTGCAGCTTTACCGCGTATTGTGAC
CTTGCATGACTTCGATATCTCAGCATCAAGTAATAATGAGAAAAAGACGGATATTCCGCAAATTTCATACAGTGTAAAGG
CTAAAACTTACCGCTATGTCGGGGCGACAGCTGCTGCAAGTGTGGAAAATACAGCTAAAGCAGATGCAGGAGGTGCTCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380U8X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.385

99.583

0.721
  comO Acinetobacter baylyi ADP1

67.755

100

0.692