Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MN200_RS01825 Genome accession   NZ_CP093968
Coordinates   380558..381784 (-) Length   408 a.a.
NCBI ID   WP_242759981.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375558..386784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS01800 (MN200_01800) - 376911..377234 (+) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -
  MN200_RS01805 (MN200_01805) rlmB 377377..378126 (+) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MN200_RS01810 (MN200_01810) - 378160..379077 (+) 918 WP_242759978.1 DMT family transporter -
  MN200_RS01815 (MN200_01815) coaE 379092..379691 (-) 600 WP_242759979.1 dephospho-CoA kinase -
  MN200_RS01820 (MN200_01820) pilD 379698..380558 (-) 861 WP_242759980.1 A24 family peptidase Machinery gene
  MN200_RS01825 (MN200_01825) pilC 380558..381784 (-) 1227 WP_242759981.1 type II secretion system F family protein Machinery gene
  MN200_RS01830 (MN200_01830) pilB 381815..383527 (-) 1713 WP_242759982.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MN200_RS01835 (MN200_01835) tpiA 383807..384598 (+) 792 WP_242759983.1 triose-phosphate isomerase -
  MN200_RS01840 (MN200_01840) secG 384612..384941 (+) 330 WP_168159357.1 preprotein translocase subunit SecG -
  MN200_RS01870 (MN200_01870) rimP 385895..386419 (+) 525 WP_004692708.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44762.18 Da        Isoelectric Point: 9.8734

>NTDB_id=666076 MN200_RS01825 WP_242759981.1 380558..381784(-) (pilC) [Acinetobacter sp. LUNF3]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQGLFSSFGADLPAFTQMVVNMSDWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=666076 MN200_RS01825 WP_242759981.1 380558..381784(-) (pilC) [Acinetobacter sp. LUNF3]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTTGCCCTCGCCAAAGTTACTTTGCGTAAACAAGGGATTACTATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATAATGAAGAAAAAAGTGACGACACTGGACATCACGATTTTCACCAGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATCGTGGCTGAAGGCTTGGAAAACCCGTCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGCGAAGTTGAGGGTGGTAATACCTTTGCAGGAGCACTCAAAAAATATCCGCAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCAGGTGCACTTGAGACCATGCTGGATCGTGTGGCGGTCTATAAA
GAGAAAAGTGAATTACTGAAACAAAAAATTAAAAAGGCCATGAAATACCCTGCAACCGTGGTTGTGGTTGCGGTGATCGT
GACTATTATTTTGATGGTCAAAGTTGTCCCTGTTTTTCAAGGACTTTTTAGTTCCTTTGGAGCAGATTTACCCGCTTTTA
CTCAAATGGTGGTGAATATGTCTGATTGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGCGTGGTGATTACC
GCTTTACTCGAAACCAAAAAGCGCAGTAAAAAGTTTCGTGACATGCTGGATAAAGCCGCTCTGAAAGCCCCAATTTTCGG
TGATTTAGTCTATAAAGCGATTATCGCACGCTATAGCCGTACCCTATCGACAACCTTTGCTGCAGGTGTACCTTTAATTG
ATGCCCTCGAGTCTACAGCGGGTGCAACCAATAACGTAGTCTATGAAGAAGCCGTGATGAAGATCCGTGAAGATGTCGCA
ACAGGACAACAACTTCAATTCGCAATGCGTGCCACCAATAAATTTCCATCGATGGCAGTACAAATGGTAGCGATTGGTGA
AGAATCTGGTGCTCTCGATGCCATGCTGGATAAAGTTGCAACCCACTATGAAAATGAAGTCGATAATGCGGTGGATGGAT
TGACCTCAATGATGGAACCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.971

100

0.89
  pilC Acinetobacter baylyi ADP1

82.108

100

0.821
  pilC Pseudomonas stutzeri DSM 10701

60.988

99.265

0.605
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.912

100

0.419
  pilC Thermus thermophilus HB27

36.908

98.284

0.363