NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	MN200_RS01820	Genome accession	NZ_CP093968
Coordinates	379698..380558 (-)	Length	286 a.a.
NCBI ID	WP_242759980.1	Uniprot ID	-
Organism	Acinetobacter sp. LUNF3
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 374698..385558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MN200_RS01795 (MN200_01795)	recN	374857..376518 (-)	1662	WP_058868790.1	DNA repair protein RecN	-
MN200_RS01800 (MN200_01800)	-	376911..377234 (+)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
MN200_RS01805 (MN200_01805)	rlmB	377377..378126 (+)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
MN200_RS01810 (MN200_01810)	-	378160..379077 (+)	918	WP_242759978.1	DMT family transporter	-
MN200_RS01815 (MN200_01815)	coaE	379092..379691 (-)	600	WP_242759979.1	dephospho-CoA kinase	-
MN200_RS01820 (MN200_01820)	pilD	379698..380558 (-)	861	WP_242759980.1	A24 family peptidase	Machinery gene
MN200_RS01825 (MN200_01825)	pilC	380558..381784 (-)	1227	WP_242759981.1	type II secretion system F family protein	Machinery gene
MN200_RS01830 (MN200_01830)	pilB	381815..383527 (-)	1713	WP_242759982.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MN200_RS01835 (MN200_01835)	tpiA	383807..384598 (+)	792	WP_242759983.1	triose-phosphate isomerase	-
MN200_RS01840 (MN200_01840)	secG	384612..384941 (+)	330	WP_168159357.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 31986.38 Da Isoelectric Point: 8.0620

                                >NTDB_id=666075 MN200_RS01820 WP_242759980.1 379698..380558(-) (pilD) [Acinetobacter sp. LUNF3]

MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLTLSKPASTCPKCKSA

IHWYQNIPVMSWFLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTVQMLFGLVLTYILITLTFIDFDTQLLPDR

YTLTLAGLGLGVNSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

Download Length: 861 bp

                                >NTDB_id=666075 MN200_RS01820 WP_242759980.1 379698..380558(-) (pilD) [Acinetobacter sp. LUNF3]

ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG

TAGTTTTCTAAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTACTTC

ATCCCGAGCAACCGATTATTGATGAAACGAAACTCACGTTGAGTAAGCCTGCCTCAACCTGTCCAAAATGCAAAAGTGCC

ATACACTGGTATCAAAATATCCCTGTGATGAGTTGGTTCCTGCTACGAGGAAAGTGTGGCACTTGCCATAATCCGATCAG

CATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCATTGGTCGTGGTTGCAGTCTTTGGTCCAACAGTCCAAA

TGCTGTTCGGTCTCGTACTCACTTACATTTTAATCACCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC

TATACCCTCACCCTTGCAGGTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCGACAGCGGCCATTTGGGG

TTACATCATTGGTTTCTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGCAAGGAAGGTATGGGTTATG

GTGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGTCCTTTGCTACTACCACTGATTGTGCTACTTTCTTCTTTC

GTAGGCGCCATTATCGGCATCATCCTGCTCAAAGTCCGTAAAGAAAATCAGCCTTTTGCTTTTGGTCCGTATATTGCCAT

CGCAGGATGGATTGCCTTTTTGTGGGGTGAGCAAATTATGAAAATATACTTAGGCAATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	78.596	99.65	0.783
pilD	Acinetobacter nosocomialis M2	78.596	99.65	0.783
pilD	Vibrio cholerae strain A1552	54.104	93.706	0.507
pilD	Vibrio campbellii strain DS40M4	51.311	93.357	0.479
pilD	Neisseria gonorrhoeae MS11	45.788	95.455	0.437

Detailed information NTG0666075