Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MOQ58_RS25215 Genome accession   NZ_CP093428
Coordinates   5533627..5534844 (+) Length   405 a.a.
NCBI ID   WP_280162238.1    Uniprot ID   -
Organism   Pseudomonas migulae strain 8R6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5528627..5539844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOQ58_RS25195 (MOQ58_25155) - 5530027..5530323 (+) 297 WP_192419982.1 DUF2845 domain-containing protein -
  MOQ58_RS25200 (MOQ58_25160) - 5530599..5530952 (-) 354 WP_008042835.1 BON domain-containing protein -
  MOQ58_RS25205 (MOQ58_25165) - 5531282..5531698 (-) 417 WP_192419980.1 pilin -
  MOQ58_RS25210 (MOQ58_25170) pilB 5531924..5533624 (+) 1701 WP_223481777.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MOQ58_RS25215 (MOQ58_25175) pilC 5533627..5534844 (+) 1218 WP_280162238.1 type II secretion system F family protein Machinery gene
  MOQ58_RS25220 (MOQ58_25180) pilD 5534846..5535718 (+) 873 WP_008033208.1 A24 family peptidase Machinery gene
  MOQ58_RS25225 (MOQ58_25185) coaE 5535715..5536338 (+) 624 WP_223414094.1 dephospho-CoA kinase -
  MOQ58_RS25230 (MOQ58_25190) yacG 5536335..5536535 (+) 201 WP_008033210.1 DNA gyrase inhibitor YacG -
  MOQ58_RS25235 (MOQ58_25195) - 5536544..5536759 (-) 216 WP_008033212.1 hypothetical protein -
  MOQ58_RS25240 (MOQ58_25200) - 5536824..5537513 (-) 690 WP_192227990.1 energy-coupling factor ABC transporter permease -
  MOQ58_RS25245 (MOQ58_25205) - 5538521..5538760 (+) 240 WP_223453089.1 DUF2790 domain-containing protein -
  MOQ58_RS25250 (MOQ58_25210) - 5538770..5539417 (-) 648 WP_008028719.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44174.05 Da        Isoelectric Point: 9.9923

>NTDB_id=664661 MOQ58_RS25215 WP_280162238.1 5533627..5534844(+) (pilC) [Pseudomonas migulae strain 8R6]
MAVKAAKINVYAWEGTDKKGTKITGELSAQNPALIKAQLRKQGINPGKVRKKSASFFSLGQRIKANDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVVVAIIVTGILLVKVVPQFESVFKGFGAQLPAFTVMVIGLSQFMQDWWWLMLGVLLAAIFGVR
HAFKTSQGFRDRTDTWLLKLPLIGALMYKSAVARYARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRTAGVFPNMAIQMTAIGEESGALDDMLDKVASFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGNAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=664661 MOQ58_RS25215 WP_280162238.1 5533627..5534844(+) (pilC) [Pseudomonas migulae strain 8R6]
ATGGCGGTCAAAGCAGCAAAAATCAATGTGTACGCCTGGGAAGGCACCGATAAAAAAGGTACGAAAATAACCGGCGAACT
CAGCGCTCAGAACCCGGCGCTGATCAAGGCGCAACTGCGCAAGCAAGGCATCAACCCCGGCAAGGTGCGCAAGAAATCCG
CCTCGTTTTTCAGTCTCGGCCAACGCATCAAGGCGAATGACATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAA
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCGGCGAAGGCTTCGAAAACCCGGCCATGCGCAAACTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCGGGTAACAGCTTCGCGGCAGCCCTGCGCAAAAAGCCGCAGTATTTTGATGAGCTCTACT
GCAATCTGGTGGATGCCGGCGAACAGGCCGGCGCGCTGGACACCCTGTTGGAGCGGGTCGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACTTATCCGCTGGCGGTGGTGGTCGTCGCGATCATCGTCACCGGGAT
TCTGCTGGTCAAGGTGGTGCCGCAATTCGAGTCGGTGTTCAAAGGTTTTGGTGCGCAACTGCCGGCGTTCACGGTGATGG
TCATCGGCCTGTCGCAGTTCATGCAGGATTGGTGGTGGCTGATGCTTGGCGTGCTGCTTGCGGCGATATTCGGTGTGCGC
CACGCCTTCAAGACATCGCAAGGCTTTCGGGACCGGACAGACACCTGGCTGCTGAAACTGCCATTGATTGGCGCATTGAT
GTACAAGTCCGCCGTGGCCCGTTACGCCCGTACGCTGTCGACCACTTTCGCCGCAGGTGTGCCGCTGGTCGAGGCGCTGG
AATCAGTGGCGGGCGCGACCGGCAACATCGTGTTCAAGCGGGCGGTGCTGCGTATCAAGCAGGACGTTTCGACGGGGATG
CAGCTGAATTTCTCCATGCGCACCGCCGGCGTCTTTCCGAACATGGCGATCCAGATGACGGCCATTGGCGAAGAGTCCGG
GGCACTGGACGACATGCTCGACAAGGTCGCCAGTTTCTATGAGGCGGAAGTCGACAATATGGTCGACAATCTCACCAGTC
TGATGGAGCCATTCATCATGGTGGTGCTGGGTGTTATCGTCGGCGGCCTGGTGGTTGCGATGTACCTGCCCATTTTCCAA
CTCGGCAATGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

71.605

100

0.716
  pilC Acinetobacter baylyi ADP1

60.049

100

0.605
  pilC Acinetobacter baumannii D1279779

59.069

100

0.595
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

42.928

99.506

0.427
  pilC Vibrio cholerae strain A1552

43.142

99.012

0.427
  pilG Neisseria meningitidis 44/76-A

42.432

99.506

0.422
  pilC Vibrio campbellii strain DS40M4

41.542

99.259

0.412
  pilC Thermus thermophilus HB27

38.847

98.519

0.383