Detailed information NTG0664662

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MOQ58_RS25220
• Genome accession: NZ_CP093428
• Coordinates: 5534846..5535718 (+)
• Length: 290 a.a.
• NCBI ID: WP_008033208.1
• Uniprot ID: -
• Organism: Pseudomonas migulae strain 8R6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5529846..5540718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MOQ58_RS25195 (MOQ58_25155)	-	5530027..5530323 (+)	297	WP_192419982.1	DUF2845 domain-containing protein	-
MOQ58_RS25200 (MOQ58_25160)	-	5530599..5530952 (-)	354	WP_008042835.1	BON domain-containing protein	-
MOQ58_RS25205 (MOQ58_25165)	-	5531282..5531698 (-)	417	WP_192419980.1	pilin	-
MOQ58_RS25210 (MOQ58_25170)	pilB	5531924..5533624 (+)	1701	WP_223481777.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MOQ58_RS25215 (MOQ58_25175)	pilC	5533627..5534844 (+)	1218	WP_280162238.1	type II secretion system F family protein	Machinery gene
MOQ58_RS25220 (MOQ58_25180)	pilD	5534846..5535718 (+)	873	WP_008033208.1	A24 family peptidase	Machinery gene
MOQ58_RS25225 (MOQ58_25185)	coaE	5535715..5536338 (+)	624	WP_223414094.1	dephospho-CoA kinase	-
MOQ58_RS25230 (MOQ58_25190)	yacG	5536335..5536535 (+)	201	WP_008033210.1	DNA gyrase inhibitor YacG	-
MOQ58_RS25235 (MOQ58_25195)	-	5536544..5536759 (-)	216	WP_008033212.1	hypothetical protein	-
MOQ58_RS25240 (MOQ58_25200)	-	5536824..5537513 (-)	690	WP_192227990.1	energy-coupling factor ABC transporter permease	-
MOQ58_RS25245 (MOQ58_25205)	-	5538521..5538760 (+)	240	WP_223453089.1	DUF2790 domain-containing protein	-
MOQ58_RS25250 (MOQ58_25210)	-	5538770..5539417 (-)	648	WP_008028719.1	methyl-accepting chemotaxis protein	-
MOQ58_RS25255 (MOQ58_25215)	-	5539414..5540682 (-)	1269	WP_223437611.1	OprD family porin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32174.54 Da
• Isoelectric Point: 7.7304

>NTDB_id=664662 MOQ58_RS25220 WP_008033208.1 5534846..5535718(+) (pilD) [Pseudomonas migulae strain 8R6]
MPLNEILTVYPLAFVVIALLVGLLVGSFLNVVIWRLPKMLEREWQLQARDILGLPGETPPATYNLMLPHSECPHCGHRIR
AWENIPLLSYVFLRGRCSSCATPISKRYPLTELACGLLSAFIAWHFGFGWQAGMVLVLSWGLLAMSLIDAEHQLLPDVLV
LPLMWLGLVVNSFELFVPLHEALWGAIAGYMALWSVFWLFKLITGKEGIGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AIIGMILLSLRNAKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=664662 MOQ58_RS25220 WP_008033208.1 5534846..5535718(+) (pilD) [Pseudomonas migulae strain 8R6]
ATGCCCTTGAACGAAATCCTGACCGTGTACCCGTTGGCGTTTGTCGTCATTGCACTGCTGGTCGGCTTGCTGGTCGGCAG
CTTCCTCAATGTGGTGATCTGGCGCCTGCCGAAAATGCTCGAGCGTGAGTGGCAATTGCAGGCCCGGGACATTCTCGGTT
TGCCTGGCGAAACACCGCCTGCGACCTACAACCTGATGCTGCCCCACTCCGAGTGCCCGCATTGTGGGCACCGAATTCGC
GCCTGGGAAAATATCCCGCTGCTCAGTTACGTGTTTTTACGTGGACGATGCTCAAGCTGCGCAACGCCCATCAGCAAACG
CTACCCCTTGACCGAACTGGCCTGCGGCCTGCTGTCAGCGTTCATTGCCTGGCATTTCGGTTTCGGCTGGCAAGCCGGGA
TGGTGCTGGTCCTGAGCTGGGGCCTGTTGGCCATGAGCCTGATCGACGCCGAGCATCAACTGTTGCCGGATGTGCTGGTG
CTACCGCTGATGTGGCTGGGACTGGTCGTCAACAGCTTCGAATTGTTCGTGCCATTGCACGAGGCGCTGTGGGGCGCAAT
TGCAGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATCGGCCACGGCGATT
TCAAGCTGTTGGCCATGCTGGGCGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCATTCTGTTGTCGTCCCTGGTGGGT
GCGATTATCGGCATGATTTTGCTGAGCCTGCGCAATGCGAAAACCTCGACCCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.546	97.241	0.521
pilD	Vibrio campbellii strain DS40M4	51.064	97.241	0.497
pilD	Acinetobacter baumannii D1279779	50.365	94.483	0.476
pilD	Acinetobacter nosocomialis M2	50.365	94.483	0.476
pilD	Neisseria gonorrhoeae MS11	48.148	93.103	0.448