Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MNR01_RS14720 Genome accession   NZ_CP093341
Coordinates   3276595..3277848 (-) Length   417 a.a.
NCBI ID   WP_241918506.1    Uniprot ID   -
Organism   Lysobacter sp. S4-A87     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3271595..3282848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNR01_RS14705 (MNR01_14705) - 3273968..3274966 (+) 999 WP_256451846.1 Nudix family hydrolase -
  MNR01_RS14710 (MNR01_14710) coaE 3275024..3275641 (-) 618 WP_241918504.1 dephospho-CoA kinase -
  MNR01_RS14715 (MNR01_14715) pilD 3275705..3276568 (-) 864 WP_241918505.1 A24 family peptidase Machinery gene
  MNR01_RS14720 (MNR01_14720) pilC 3276595..3277848 (-) 1254 WP_241918506.1 type II secretion system F family protein Machinery gene
  MNR01_RS14725 (MNR01_14725) pilB 3277852..3279576 (-) 1725 WP_241918507.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MNR01_RS14730 (MNR01_14730) - 3279747..3280604 (+) 858 WP_241918508.1 glycosyltransferase family 2 protein -
  MNR01_RS14735 (MNR01_14735) - 3280604..3281332 (+) 729 WP_241918509.1 class I SAM-dependent methyltransferase -
  MNR01_RS14740 (MNR01_14740) - 3281272..3282156 (+) 885 WP_241918510.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45336.56 Da        Isoelectric Point: 10.1309

>NTDB_id=663830 MNR01_RS14720 WP_241918506.1 3276595..3277848(-) (pilC) [Lysobacter sp. S4-A87]
MSATRIATKPNPVRRADAMPIFTWQGTDKRGKVMKGEQQAKNANALRAELRKQGIKPNVVKPKGKPLFGAAGKRITPLDI
AIFSRQIATMMKSGVPIVGAMEIIANGNKNPRMTKLVNTVRSDIESGSSLYEGLCKHPVQFDELYRNLVKAGESAGVLET
VLDTVATYKENLEALKGKIKKAMFYPAMVVAVALIVSSILLVFVVPQFEEVFKGFGADLPAFTKLIISASDFMVAYWWLV
FGAIAGTIASFIMAKKRSVAFSRFLDRMTLKVPVVGQIMHNSAIARFSRTLAVTFKAGVPLVEALDTVAGATGNIVYEDA
VHQIRDDVSVGYPVNVAMKQVNLFPHMVTQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALASLLEPLIMVFLGVIVG
GMVIAMYLPIFKLAAVV

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=663830 MNR01_RS14720 WP_241918506.1 3276595..3277848(-) (pilC) [Lysobacter sp. S4-A87]
ATGTCCGCGACTCGCATTGCCACCAAGCCCAACCCCGTGCGCCGCGCCGACGCCATGCCGATTTTCACCTGGCAGGGCAC
CGACAAGCGCGGCAAGGTGATGAAAGGCGAACAGCAGGCCAAGAACGCCAATGCCCTGCGCGCCGAACTGCGCAAGCAGG
GCATCAAGCCCAACGTAGTCAAGCCCAAGGGCAAGCCGCTGTTTGGCGCGGCCGGCAAGCGCATCACCCCACTCGACATC
GCCATCTTCAGTCGCCAGATCGCGACGATGATGAAGTCGGGCGTCCCGATCGTCGGTGCGATGGAGATCATCGCCAACGG
CAACAAGAATCCGCGGATGACGAAGCTGGTCAACACGGTGCGCTCCGATATCGAAAGCGGCTCTTCGCTGTACGAAGGGC
TGTGCAAGCACCCGGTCCAGTTCGACGAACTTTACCGGAACCTGGTCAAGGCCGGTGAATCGGCCGGCGTGCTCGAAACG
GTGCTCGACACCGTCGCGACCTACAAGGAAAACCTTGAAGCGCTCAAGGGCAAGATCAAGAAGGCGATGTTCTACCCGGC
CATGGTGGTGGCGGTCGCATTGATCGTCAGCTCGATCCTGCTGGTGTTCGTGGTGCCCCAGTTCGAGGAAGTGTTCAAGG
GATTCGGCGCGGACCTGCCCGCTTTCACGAAGCTGATCATCTCGGCAAGCGACTTCATGGTTGCCTACTGGTGGCTGGTT
TTCGGCGCCATCGCAGGCACGATTGCCAGCTTCATCATGGCCAAGAAGCGCTCCGTGGCGTTCTCGCGGTTCCTCGACCG
CATGACCCTCAAGGTCCCGGTCGTCGGCCAGATCATGCACAACTCGGCCATCGCGCGCTTCTCGCGCACGCTGGCAGTGA
CCTTCAAGGCCGGCGTTCCGCTCGTCGAGGCGCTTGATACCGTCGCAGGGGCCACCGGCAACATCGTCTATGAGGATGCC
GTGCACCAGATCAGGGACGACGTCTCGGTCGGGTACCCGGTCAATGTGGCGATGAAACAGGTCAACCTTTTCCCGCACAT
GGTCACGCAGATGACCGCGATCGGCGAAGAGGCCGGCGCACTCGACACGATGCTCTTCAAGGTCGCCGAGTTCTACGAGC
AGGAGGTCAACAACGCCGTCGACGCGCTGGCCAGCCTGCTCGAACCCCTGATCATGGTGTTCCTGGGCGTGATCGTCGGC
GGCATGGTCATCGCCATGTACCTGCCGATCTTCAAGCTGGCGGCGGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

56.313

94.964

0.535
  pilC Pseudomonas stutzeri DSM 10701

54.408

95.204

0.518
  pilC Acinetobacter baumannii D1279779

51.97

97.362

0.506
  pilC Acinetobacter baylyi ADP1

51.852

97.122

0.504
  pilG Neisseria gonorrhoeae MS11

43.928

92.806

0.408
  pilG Neisseria meningitidis 44/76-A

43.669

92.806

0.405
  pilC Vibrio cholerae strain A1552

41.162

94.964

0.391
  pilC Vibrio campbellii strain DS40M4

40.909

94.964

0.388
  pilC Thermus thermophilus HB27

38.278

100

0.384