Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MNR01_RS14715 Genome accession   NZ_CP093341
Coordinates   3275705..3276568 (-) Length   287 a.a.
NCBI ID   WP_241918505.1    Uniprot ID   -
Organism   Lysobacter sp. S4-A87     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3270705..3281568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNR01_RS14700 (MNR01_14700) secA 3271150..3273882 (+) 2733 WP_241918503.1 preprotein translocase subunit SecA -
  MNR01_RS14705 (MNR01_14705) - 3273968..3274966 (+) 999 WP_256451846.1 Nudix family hydrolase -
  MNR01_RS14710 (MNR01_14710) coaE 3275024..3275641 (-) 618 WP_241918504.1 dephospho-CoA kinase -
  MNR01_RS14715 (MNR01_14715) pilD 3275705..3276568 (-) 864 WP_241918505.1 A24 family peptidase Machinery gene
  MNR01_RS14720 (MNR01_14720) pilC 3276595..3277848 (-) 1254 WP_241918506.1 type II secretion system F family protein Machinery gene
  MNR01_RS14725 (MNR01_14725) pilB 3277852..3279576 (-) 1725 WP_241918507.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MNR01_RS14730 (MNR01_14730) - 3279747..3280604 (+) 858 WP_241918508.1 glycosyltransferase family 2 protein -
  MNR01_RS14735 (MNR01_14735) - 3280604..3281332 (+) 729 WP_241918509.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31917.90 Da        Isoelectric Point: 9.1775

>NTDB_id=663829 MNR01_RS14715 WP_241918505.1 3275705..3276568(-) (pilD) [Lysobacter sp. S4-A87]
MAFLDQNPAIGFPLAAGLGLLVGSFLNVVILRLPKRLEWQWRRDSREVLGEPETYDPPPPGIVIERSHCPHCKHQLAWYE
NIPVFSYLALRGRCRNCKTPISPQYPLVELLTMLLVVACVWRFGFGWQGFGAIVFTCFLIVLSGIDLRTQLLPDQLTLPL
MWLGLIAASDNLYFPAKPALLGAVAGYLSLWIVWWLFKQITGKEGMGHGDFKLLAAIGAWTGLKGILPTILLSSLVGAII
GSIWLAMKGRDRATPIPFGPYLAVAGWITFFWGEQIVGTYLRISGLR

Nucleotide


Download         Length: 864 bp        

>NTDB_id=663829 MNR01_RS14715 WP_241918505.1 3275705..3276568(-) (pilD) [Lysobacter sp. S4-A87]
ATGGCATTCCTAGATCAGAACCCCGCCATCGGCTTCCCGCTGGCGGCCGGGCTCGGCCTGTTGGTCGGCAGCTTCCTCAA
TGTGGTGATCCTGCGCCTGCCCAAGCGGCTGGAGTGGCAGTGGCGCCGCGACAGCCGCGAAGTCCTGGGCGAGCCGGAGA
CCTACGATCCGCCGCCACCCGGGATCGTGATCGAGCGTTCGCACTGCCCGCACTGCAAGCACCAGCTGGCCTGGTACGAG
AACATCCCGGTGTTCAGCTACCTGGCGCTGCGCGGTCGCTGCCGCAACTGCAAGACGCCGATCTCGCCGCAGTACCCGCT
GGTCGAGCTGCTGACGATGCTGCTGGTGGTCGCCTGCGTCTGGCGCTTCGGCTTCGGCTGGCAGGGCTTTGGCGCGATCG
TCTTCACCTGTTTCCTGATCGTGCTGTCGGGCATCGACCTGCGCACGCAGTTGCTGCCGGACCAGTTGACCCTGCCATTG
ATGTGGCTGGGCCTGATAGCCGCGTCCGACAACCTCTACTTCCCGGCCAAACCGGCCCTGCTCGGCGCCGTTGCCGGGTA
TCTGAGCCTGTGGATCGTCTGGTGGCTGTTCAAGCAGATCACCGGCAAGGAAGGCATGGGCCACGGCGATTTCAAGCTGC
TGGCTGCAATCGGCGCCTGGACCGGCCTCAAGGGCATCCTGCCGACGATCCTGCTGTCGTCCCTTGTCGGGGCGATCATC
GGGTCGATCTGGCTGGCGATGAAGGGCCGCGACCGTGCCACGCCCATTCCGTTCGGCCCCTACCTGGCCGTTGCCGGGTG
GATCACCTTCTTCTGGGGCGAGCAGATCGTCGGCACCTACCTGCGGATCTCTGGCCTGCGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Type IV leader peptidase family (Peptidase_A24)

(133-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

48.264

100

0.484
  pilD Vibrio campbellii strain DS40M4

47.535

98.955

0.47
  pilD Acinetobacter nosocomialis M2

47.518

98.258

0.467
  pilD Vibrio cholerae strain A1552

48.727

95.819

0.467
  pilD Neisseria gonorrhoeae MS11

46.209

96.516

0.446