Detailed information NTG0663676

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: MNQ95_RS10180
• Genome accession: NZ_CP093331
• Coordinates: 2253451..2254710 (-)
• Length: 419 a.a.
• NCBI ID: WP_241952798.1
• Uniprot ID: -
• Organism: Pseudoxanthomonas daejeonensis strain S9-A64R
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2248451..2259710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MNQ95_RS10165 (MNQ95_10165)	-	2249916..2250863 (+)	948	WP_241952795.1	Nudix family hydrolase	-
MNQ95_RS10170 (MNQ95_10170)	coaE	2251390..2252007 (-)	618	WP_241952796.1	dephospho-CoA kinase	-
MNQ95_RS10175 (MNQ95_10175)	-	2252569..2253432 (-)	864	WP_241952797.1	A24 family peptidase	-
MNQ95_RS10180 (MNQ95_10180)	pilC	2253451..2254710 (-)	1260	WP_241952798.1	type II secretion system F family protein	Machinery gene
MNQ95_RS10185 (MNQ95_10185)	pilA	2255627..2256025 (+)	399	WP_277884371.1	pilin	Machinery gene
MNQ95_RS10190 (MNQ95_10190)	pilB	2256275..2258011 (+)	1737	WP_241952799.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MNQ95_RS10195 (MNQ95_10195)	-	2259152..2259643 (+)	492	WP_241952800.1	transposase	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 45983.39 Da
• Isoelectric Point: 10.0542

>NTDB_id=663676 MNQ95_RS10180 WP_241952798.1 2253451..2254710(-) (pilC) [Pseudoxanthomonas daejeonensis strain S9-A64R]
MSATRSAVKKTVPVARATSQLVPFVWEGTDKRGIKMKGEQPAKNANMLKAELRRQGITPTVVKPKPKPLFGQAGSVITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGGGHKNPRMKAVVDQIRTDIEGGSSMYEAINKHPVQFDELYRNLVKVGESSGVL
ETVLDTIASYKENLEALKGKIKKAMFYPLMTVAVAVIVSAILLIFVVPQFEATFQGFGAELPAFTQLIVNASRFMVAYWW
AILLIVVGSFFAFFFFYKRSLAFQHFLDRMILKIPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALESVAGATGNTVYE
KAVYRIRDDVAVGYPVNLAMKQTHLFPHMVIQMTAIGEEAGALDTMLFKVAEYYEQEVNNAVDALASLIEPMIMVVLGVL
VGGMVIGMYLPIFKLAATI

Nucleotide

• Length: 1260 bp

>NTDB_id=663676 MNQ95_RS10180 WP_241952798.1 2253451..2254710(-) (pilC) [Pseudoxanthomonas daejeonensis strain S9-A64R]
ATGTCCGCGACCCGTAGCGCCGTGAAGAAGACCGTGCCCGTCGCACGGGCCACCAGCCAGTTGGTGCCGTTCGTCTGGGA
GGGCACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGCCGGCCAAGAACGCCAACATGCTCAAGGCCGAGCTTCGCC
GCCAGGGGATCACCCCCACGGTGGTCAAGCCCAAGCCCAAGCCGCTCTTCGGCCAGGCCGGCTCGGTCATCACCCCCAAG
GACATCGCCTTCTTCAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTCCCGATCGTGGGATCGCTGGAGATCATCGG
CGGCGGGCACAAGAACCCACGCATGAAGGCCGTGGTCGACCAGATCCGTACCGACATCGAGGGCGGCTCCTCGATGTACG
AAGCGATCAACAAGCATCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGTCGGCGAAAGCTCCGGCGTGCTG
GAGACGGTGCTGGACACCATCGCCAGCTACAAGGAGAACCTCGAAGCGCTGAAGGGCAAGATCAAGAAGGCGATGTTCTA
TCCGCTCATGACCGTCGCCGTGGCGGTGATCGTCAGCGCGATCCTGCTGATCTTCGTGGTCCCGCAGTTCGAGGCGACCT
TCCAGGGCTTCGGCGCCGAACTGCCGGCGTTCACCCAGCTCATCGTCAACGCATCGCGGTTCATGGTCGCGTACTGGTGG
GCGATCCTGCTGATCGTGGTGGGCTCGTTCTTCGCGTTCTTCTTCTTCTACAAGCGTTCCCTGGCCTTCCAGCATTTCCT
GGACCGCATGATCCTGAAGATCCCGGTGATCGGCCAGATCATGCACAACAGCGCGATCGCCCGCTTCGCCCGCACCACCG
CGGTGACCTTCAAGGCCGGCGTGCCGCTGGTCGAGGCGCTGGAATCGGTCGCCGGCGCCACCGGCAACACGGTCTACGAA
AAAGCGGTCTATCGCATCCGCGACGACGTCGCCGTCGGCTATCCGGTCAACCTGGCGATGAAGCAGACCCACCTGTTCCC
GCACATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCGGGCGCTCTGGACACCATGCTGTTCAAGGTCGCCGAGTACT
ACGAGCAGGAAGTGAACAACGCGGTCGACGCGCTGGCCAGCCTGATCGAGCCGATGATCATGGTGGTGCTGGGCGTGCTG
GTCGGCGGCATGGTGATCGGCATGTACCTGCCCATCTTCAAGCTCGCCGCAACCATCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (85-208)

• Type II secretion system (T2SS), protein F (T2SSF) (289-411)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.293	94.511	0.513
pilC	Legionella pneumophila strain ERS1305867	53.133	95.227	0.506
pilC	Acinetobacter baumannii D1279779	51.117	96.181	0.492
pilC	Acinetobacter baylyi ADP1	50.245	97.375	0.489
pilG	Neisseria gonorrhoeae MS11	41.5	95.465	0.396
pilG	Neisseria meningitidis 44/76-A	41.25	95.465	0.394
pilC	Vibrio cholerae strain A1552	39.259	96.659	0.379
pilC	Thermus thermophilus HB27	38.519	96.659	0.372
pilC	Vibrio campbellii strain DS40M4	39	95.465	0.372