Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AS4_RS01610 Genome accession   NZ_AP014630
Coordinates   346099..347328 (-) Length   409 a.a.
NCBI ID   WP_096732750.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain NBRC 110550     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341099..352328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS4_RS01585 (AS4_03100) - 342341..342664 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  AS4_RS01590 (AS4_03110) rlmB 342812..343567 (+) 756 WP_096732746.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AS4_RS01595 (AS4_03120) - 343606..344517 (+) 912 WP_096732747.1 DMT family transporter -
  AS4_RS01600 (AS4_03130) coaE 344586..345185 (-) 600 WP_096732748.1 dephospho-CoA kinase -
  AS4_RS01605 (AS4_03140) pilD 345212..346093 (-) 882 WP_171478414.1 A24 family peptidase Machinery gene
  AS4_RS01610 (AS4_03150) pilC 346099..347328 (-) 1230 WP_096732750.1 type II secretion system F family protein Machinery gene
  AS4_RS01615 (AS4_03160) pilB 347356..349068 (-) 1713 WP_096732752.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AS4_RS01620 (AS4_03170) tpiA 349346..350140 (+) 795 WP_096732754.1 triose-phosphate isomerase -
  AS4_RS01625 (AS4_03180) secG 350150..350491 (+) 342 WP_034613616.1 preprotein translocase subunit SecG -
  AS4_RS01650 (AS4_03190) rimP 351283..351807 (+) 525 WP_004718339.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45222.77 Da        Isoelectric Point: 9.9245

>NTDB_id=66355 AS4_RS01610 WP_096732750.1 346099..347328(-) (pilC) [Acinetobacter guillouiae strain NBRC 110550]
MAAKKAQMMPTFAYDGVDRKGIKVKGELPSRNMALAKVTLRKQGITIKTIREKKKNILEGLMKKGISTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREIVLGIKSEVEGGNTFAGALKKYPRYFDSLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVIVVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSNWMQKYWFILILFIAVVIT
AFLEAKKRSKKFQDFLDRTALKMPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQAVMKIREDVA
TGQQLNFAMRVTNRFPSMAIQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGILVGGLVIAMYLP
IFQMGSVIS

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=66355 AS4_RS01610 WP_096732750.1 346099..347328(-) (pilC) [Acinetobacter guillouiae strain NBRC 110550]
ATGGCAGCTAAAAAAGCTCAAATGATGCCTACATTTGCTTATGACGGGGTTGATCGTAAAGGGATCAAGGTTAAAGGGGA
ATTACCTTCACGTAATATGGCACTTGCAAAAGTTACCTTACGAAAACAAGGGATCACCATTAAAACCATTCGAGAAAAAA
AGAAAAATATTCTTGAAGGTTTAATGAAAAAAGGCATTTCCACTTTAGATATTACCATTTTTACTCGTCAACTCGCCACG
ATGATGAAAGCAGGTGTGCCTTTAGTGCAAAGTTTTGAAATCGTTGCAGAAGGACTAGAAAACCCCTCAATGCGTGAAAT
CGTATTGGGGATTAAAAGTGAAGTTGAAGGGGGGAATACCTTTGCTGGTGCATTAAAAAAATACCCTCGCTATTTTGATA
GCTTGTTTTGCTCACTAGTCGAATCTGGCGAACAATCGGGCGCCTTAGAAACCATGCTCGATAGGGTGGCAATTTATAAG
GAAAAGAGTGAACTTCTTAAACAAAAAATTAAAAAAGCCATGAAATATCCAATCTCGGTCATCGTTGTTGCGATCATTGT
TACCATTATTTTAATGGTTAAAGTTGTCCCTGTCTTTCAGGACTTATTTAGCTCTTTTGGTGCAGACCTCCCCGCATTCA
CTCAAATGGTGGTCAATATGTCCAATTGGATGCAAAAATATTGGTTTATTCTAATCCTATTTATCGCTGTTGTAATTACT
GCTTTTTTGGAAGCAAAAAAACGCAGTAAAAAATTTCAGGATTTTCTAGACCGAACAGCACTTAAAATGCCTATTTTTGG
CGATCTAGTCTATAAAGCCATCATTGCACGTTATAGCCGCACCCTTGCCACAACATTTGCGGCTGGTGTACCGCTCATCG
AAGCTTTAGAATCAACAGCAGGTGCAACCAATAATGTGGTTTATGAACAAGCAGTAATGAAAATTCGTGAGGATGTAGCC
ACTGGGCAACAACTTAATTTTGCCATGCGTGTCACCAATAGATTTCCTTCTATGGCCATTCAAATGGTCGCTATTGGGGA
AGAATCTGGTGCATTGGATGCAATGTTGGATAAAGTTGCAACACATTTTGAAAATGAAGTCGACAATGCTGTGGATGGCT
TAACCTCAATGATGGAGCCGTTAATTATGGCTATTTTAGGCATACTTGTGGGTGGCTTAGTCATTGCAATGTATCTGCCA
ATCTTCCAAATGGGATCAGTGATTAGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.01

99.756

0.868
  pilC Acinetobacter baylyi ADP1

84.069

99.756

0.839
  pilC Pseudomonas stutzeri DSM 10701

59.36

99.267

0.589
  pilC Legionella pneumophila strain ERS1305867

53.58

99.022

0.531
  pilG Neisseria gonorrhoeae MS11

46.115

97.555

0.45
  pilG Neisseria meningitidis 44/76-A

46.115

97.555

0.45
  pilC Vibrio cholerae strain A1552

42.26

99.511

0.421
  pilC Vibrio campbellii strain DS40M4

40.441

99.756

0.403
  pilC Thermus thermophilus HB27

36.7

99.267

0.364

Multiple sequence alignment