Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AS4_RS01605 Genome accession   NZ_AP014630
Coordinates   345212..346093 (-) Length   293 a.a.
NCBI ID   WP_171478414.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain NBRC 110550     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340212..351093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS4_RS01585 (AS4_03100) - 342341..342664 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  AS4_RS01590 (AS4_03110) rlmB 342812..343567 (+) 756 WP_096732746.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AS4_RS01595 (AS4_03120) - 343606..344517 (+) 912 WP_096732747.1 DMT family transporter -
  AS4_RS01600 (AS4_03130) coaE 344586..345185 (-) 600 WP_096732748.1 dephospho-CoA kinase -
  AS4_RS01605 (AS4_03140) pilD 345212..346093 (-) 882 WP_171478414.1 A24 family peptidase Machinery gene
  AS4_RS01610 (AS4_03150) pilC 346099..347328 (-) 1230 WP_096732750.1 type II secretion system F family protein Machinery gene
  AS4_RS01615 (AS4_03160) pilB 347356..349068 (-) 1713 WP_096732752.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AS4_RS01620 (AS4_03170) tpiA 349346..350140 (+) 795 WP_096732754.1 triose-phosphate isomerase -
  AS4_RS01625 (AS4_03180) secG 350150..350491 (+) 342 WP_034613616.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32722.26 Da        Isoelectric Point: 7.8086

>NTDB_id=66354 AS4_RS01605 WP_171478414.1 345212..346093(-) (pilD) [Acinetobacter guillouiae strain NBRC 110550]
MNMLNDLLNFLIQSPIALYLTVGILGLCVGSFLNVVIYRTPKMMEKEWRQEWHAECQLLAGSQQIVIDEEKLSLSQPAST
CPKCKTPIRWYQNIPIISWLVLRGKCASCQNPISIRYPLVELLTAVCSLTVVAVYGPTLEMVFGVLLTWVLITLTFIDFD
TQLLPDRFTLTLAAIGLGINSFHLYTTASAAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPL
IILLSSVVGAIIGIILLKIRKENVPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=66354 AS4_RS01605 WP_171478414.1 345212..346093(-) (pilD) [Acinetobacter guillouiae strain NBRC 110550]
ATGAACATGCTCAATGATTTATTAAATTTTCTGATTCAATCACCAATAGCACTCTATCTGACTGTTGGTATTTTAGGGTT
ATGTGTTGGTAGCTTTTTAAATGTAGTCATTTACCGTACTCCCAAGATGATGGAAAAAGAATGGCGACAGGAATGGCATG
CAGAATGCCAATTACTGGCAGGCTCACAACAGATTGTGATTGATGAAGAAAAACTCAGTCTCAGTCAACCAGCCTCTACC
TGTCCCAAATGTAAAACCCCAATTCGCTGGTATCAAAATATTCCCATCATCAGTTGGTTGGTTTTAAGAGGCAAATGCGC
TTCGTGTCAAAACCCGATTAGTATTCGTTATCCATTGGTTGAGCTTTTAACTGCGGTGTGTTCATTAACAGTCGTTGCTG
TTTATGGCCCCACTTTAGAAATGGTTTTTGGTGTGCTACTGACTTGGGTGCTGATCACGCTTACTTTTATTGATTTTGAC
ACTCAATTACTCCCAGATCGTTTTACCTTAACCTTAGCTGCAATAGGTTTAGGTATTAACTCATTTCATCTCTATACAAC
AGCAAGTGCTGCAATCTGGGGTTATATTATTGGTTTCCTGTGTCTTTGGATTGTCTACTATCTATTTAAAATAGTGACAG
GCAAAGAAGGCATGGGCTATGGTGACTTTAAGCTTCTTGCTGCACTTGGCGCTTGGATGGGGCCCTTGATGTTACCATTA
ATTATCCTACTGTCTTCTGTAGTGGGTGCGATCATTGGTATTATTTTACTTAAGATTCGTAAAGAAAATGTCCCTTTTGC
CTTTGGTCCTTATATTGCAATTGCAGGATGGATTGCATTTTTATGGGGTGAGCAAATTATGAAAGTATATTTAGGTCAAT
AA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(146-254)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

73.01

98.635

0.72
  pilD Acinetobacter baumannii D1279779

72.664

98.635

0.717
  pilD Vibrio campbellii strain DS40M4

54.244

92.491

0.502
  pilD Vibrio cholerae strain A1552

54.044

92.833

0.502
  pilD Neisseria gonorrhoeae MS11

46.403

94.881

0.44

Multiple sequence alignment