Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MOO40_RS02145 Genome accession   NZ_CP093308
Coordinates   467050..468291 (-) Length   413 a.a.
NCBI ID   WP_241871656.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain AC185     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462050..473291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO40_RS02115 (MOO40_02120) mutT 463043..463456 (+) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  MOO40_RS02120 (MOO40_02125) - 463553..464515 (+) 963 WP_101151075.1 IS1595 family transposase -
  MOO40_RS02125 (MOO40_02130) yacG 464557..464751 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  MOO40_RS02130 (MOO40_02135) zapD 464761..465483 (-) 723 WP_219313758.1 cell division protein ZapD -
  MOO40_RS02135 (MOO40_02140) coaE 465521..466135 (-) 615 WP_241871655.1 dephospho-CoA kinase -
  MOO40_RS02140 (MOO40_02145) pilD 466155..467027 (-) 873 WP_102987871.1 A24 family peptidase Machinery gene
  MOO40_RS02145 (MOO40_02150) pilC 467050..468291 (-) 1242 WP_241871656.1 type II secretion system F family protein Machinery gene
  MOO40_RS02150 (MOO40_02155) pilB 468407..470113 (-) 1707 WP_045525681.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  MOO40_RS02155 (MOO40_02160) - 470117..470581 (-) 465 WP_045788906.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MOO40_RS02160 (MOO40_02165) nadC 470904..471761 (-) 858 WP_241871657.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MOO40_RS02165 (MOO40_02170) - 471767..472237 (-) 471 WP_024944772.1 TIGR02281 family clan AA aspartic protease -
  MOO40_RS02170 (MOO40_02175) ampD 472384..472956 (+) 573 WP_241871659.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45434.63 Da        Isoelectric Point: 9.8637

>NTDB_id=663391 MOO40_RS02145 WP_241871656.1 467050..468291(-) (pilC) [Aeromonas hydrophila strain AC185]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LAIFLYVRAWRASQKVKDNIDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=663391 MOO40_RS02145 WP_241871656.1 467050..468291(-) (pilC) [Aeromonas hydrophila strain AC185]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTAAACCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGTTATTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCAGC
CATGCGCGAGCTCATGGGGCAGATTGCCGCCGATGTGGAGACCGGCACCCCTATGTCCGAGGCGCTGCGCCGCCATCCCC
GTCATTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAGTCCGGCGCTCTGGAGACCATCTACGATCGCATC
GCCACCTATCGCGAGAAATCTGAAGCACTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTTGTTACCTCCATCCTGCTGCTGTTTGTCATTCCCCAGTTCGAGGACATCTTCAAGAGCTTCGGTGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCG
CTCGCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACATCGACAAGTTCATACTGACCAT
CCCGGTGGTTGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGCACCCTCTCCACTACCTTTTCCGCCGGTA
TCCCGCTGGTGGATGCCTTGGTCTCTGCGGCAGGCGCCTCCGGCAACTATGTCTACCGTACTGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
AATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.605

98.063

0.506
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

47.487

96.368

0.458
  pilC Vibrio campbellii strain DS40M4

46.348

96.126

0.446
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368