Detailed information NTG0663390

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MOO40_RS02140
• Genome accession: NZ_CP093308
• Coordinates: 466155..467027 (-)
• Length: 290 a.a.
• NCBI ID: WP_102987871.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain AC185
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 461155..472027

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MOO40_RS02110 (MOO40_02115)	-	461867..463034 (+)	1168	Protein_397	tetratricopeptide repeat protein	-
MOO40_RS02115 (MOO40_02120)	mutT	463043..463456 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
MOO40_RS02120 (MOO40_02125)	-	463553..464515 (+)	963	WP_101151075.1	IS1595 family transposase	-
MOO40_RS02125 (MOO40_02130)	yacG	464557..464751 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
MOO40_RS02130 (MOO40_02135)	zapD	464761..465483 (-)	723	WP_219313758.1	cell division protein ZapD	-
MOO40_RS02135 (MOO40_02140)	coaE	465521..466135 (-)	615	WP_241871655.1	dephospho-CoA kinase	-
MOO40_RS02140 (MOO40_02145)	pilD	466155..467027 (-)	873	WP_102987871.1	A24 family peptidase	Machinery gene
MOO40_RS02145 (MOO40_02150)	pilC	467050..468291 (-)	1242	WP_241871656.1	type II secretion system F family protein	Machinery gene
MOO40_RS02150 (MOO40_02155)	pilB	468407..470113 (-)	1707	WP_045525681.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
MOO40_RS02155 (MOO40_02160)	-	470117..470581 (-)	465	WP_045788906.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
MOO40_RS02160 (MOO40_02165)	nadC	470904..471761 (-)	858	WP_241871657.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32484.77 Da
• Isoelectric Point: 6.7408

>NTDB_id=663390 MOO40_RS02140 WP_102987871.1 466155..467027(-) (pilD) [Aeromonas hydrophila strain AC185]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEDRYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISVRYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFSPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=663390 MOO40_RS02140 WP_102987871.1 466155..467027(-) (pilD) [Aeromonas hydrophila strain AC185]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCGCAGCAGGAAGATCGCTACAACCTGATGGTGCCGCGTTCAGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGACGCTGCCGTGAATGCCAGGCCCCCATCTC
GGTCCGTTATCCTCTGGTGGAATTGCTGACGGCCCTGCTCTCGCTGGTCGTTGCCGCGACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAACCTGGCAGGGGGATTTTCACCGCTGGCAGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGCTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCACTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.749	98.966	0.552
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Acinetobacter nosocomialis M2	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459