Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MKP10_RS18625 Genome accession   NZ_CP093164
Coordinates   3968792..3970009 (-) Length   405 a.a.
NCBI ID   WP_241529099.1    Uniprot ID   -
Organism   Stutzerimonas zhaodongensis strain LQ01-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3963792..3975009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKP10_RS18595 (MKP10_18595) rplM 3964050..3964478 (-) 429 WP_019342644.1 50S ribosomal protein L13 -
  MKP10_RS18600 (MKP10_18600) - 3964876..3965913 (+) 1038 WP_241529094.1 NADP(H)-dependent aldo-keto reductase -
  MKP10_RS18605 (MKP10_18605) - 3966004..3966696 (+) 693 WP_241529095.1 energy-coupling factor ABC transporter permease -
  MKP10_RS18610 (MKP10_18610) yacG 3966753..3966950 (-) 198 WP_241529096.1 DNA gyrase inhibitor YacG -
  MKP10_RS18615 (MKP10_18615) coaE 3966947..3967555 (-) 609 WP_241529097.1 dephospho-CoA kinase -
  MKP10_RS18620 (MKP10_18620) pilD 3967923..3968789 (-) 867 WP_241529098.1 prepilin peptidase Machinery gene
  MKP10_RS18625 (MKP10_18625) pilC 3968792..3970009 (-) 1218 WP_241529099.1 type II secretion system F family protein Machinery gene
  MKP10_RS18630 (MKP10_18630) pilB 3970011..3971714 (-) 1704 WP_241529100.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MKP10_RS18640 (MKP10_18640) - 3971941..3972429 (+) 489 Protein_3670 pilin -
  MKP10_RS18645 (MKP10_18645) - 3972911..3973470 (+) 560 Protein_3671 REP-associated tyrosine transposase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44065.82 Da        Isoelectric Point: 10.0261

>NTDB_id=662045 MKP10_RS18625 WP_241529099.1 3968792..3970009(-) (pilC) [Stutzerimonas zhaodongensis strain LQ01-5]
MAQKAIKTSVFAWEGTNRQGAKIKGELSGVSPAMVKAQLRKQGVNPQKVRKKSASLFSAGKKIRPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAVIVSAILLIKVVPQFQDVFANFGAELPAFTLMVIGLSEALQAWWHLVLLGLFGAAYAFK
TAHGKSERFRNWFDRFLLKMPIVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNATMKVKSDVSSGM
QLNFSMRTTGTFPSMAIQMTAIGEESGSLDEMLAKVATFYEQEVDNMVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=662045 MKP10_RS18625 WP_241529099.1 3968792..3970009(-) (pilC) [Stutzerimonas zhaodongensis strain LQ01-5]
ATGGCGCAGAAAGCTATAAAAACCAGTGTCTTCGCCTGGGAAGGTACCAACAGGCAGGGCGCAAAAATTAAGGGCGAGCT
TAGCGGCGTCAGTCCGGCGATGGTCAAGGCGCAACTGCGCAAGCAGGGCGTCAATCCGCAAAAGGTGCGCAAGAAGTCGG
CGTCGCTGTTCAGCGCTGGCAAAAAGATCAGGCCGATGGACATTGCGCTGTTTACTCGGCAGATGGCAACTATGATGAAG
GCAGGTGTGCCGCTGCTGCAGTCCTTCGACATCATTGGCGAAGGTTTCGATAACCCGAACATGCGTAAACTCGTCGATGA
CCTCAAGCAGGAGGTCGCCGCCGGCAACAGCTTCGCCACCGCGCTGCGCAAGAAGCCGCAATATTTCGACGACCTGTATT
GCAACTTGGTGGATTCTGGCGAGCAGTCCGGTTCGCTGGAGACGCTGCTGGATCGCGTTGCGACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAAAAAGCGATGAACTACCCTATCGCTGTCGTGCTAGTTGCGGTGATCGTGTCGGCGAT
CTTGCTGATCAAGGTGGTCCCGCAGTTTCAGGATGTATTTGCCAACTTCGGTGCGGAACTGCCTGCATTCACGCTGATGG
TCATTGGTCTGTCCGAGGCGTTACAGGCTTGGTGGCATCTTGTGCTGCTAGGTTTGTTCGGCGCTGCCTATGCCTTTAAG
ACGGCTCACGGCAAGTCCGAGCGTTTTCGTAACTGGTTCGATCGGTTCCTGCTCAAGATGCCGATCGTGGGTGACATCCT
CTACAAGTCGGCAGTGGCGCGTTTCGCACGGACCCTGGCGACGACCTTCGCTGCGGGCGTGCCGTTAGTGGATGCGCTGG
ACTCTGTTGCAGGCGCTACCGGCAATGTGGTCTTCCGCAATGCCACGATGAAGGTCAAGAGTGACGTGTCCAGCGGTATG
CAGCTGAACTTCTCCATGCGAACGACTGGCACCTTCCCGAGCATGGCCATCCAGATGACCGCGATCGGCGAAGAGTCCGG
CTCGCTGGACGAGATGCTGGCGAAAGTCGCGACCTTCTACGAACAAGAAGTGGACAACATGGTCGACGGTCTCACGGCCC
TGATGGAGCCGATGATCATGGCGGTTTTGGGTGTTCTGGTGGGTGGCTTGATCATCGCCATGTACCTGCCGATTTTCCAG
CTTGGGGCTGTTGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

91.358

100

0.914
  pilC Acinetobacter baylyi ADP1

59.113

100

0.593
  pilC Acinetobacter baumannii D1279779

58.765

100

0.588
  pilC Legionella pneumophila strain ERS1305867

53.03

97.778

0.519
  pilG Neisseria gonorrhoeae MS11

44.776

99.259

0.444
  pilG Neisseria meningitidis 44/76-A

44.776

99.259

0.444
  pilC Vibrio cholerae strain A1552

42.424

97.778

0.415
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402
  pilC Thermus thermophilus HB27

36.75

98.765

0.363