Detailed information NTG0662044

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MKP10_RS18620
• Genome accession: NZ_CP093164
• Coordinates: 3967923..3968789 (-)
• Length: 288 a.a.
• NCBI ID: WP_241529098.1
• Uniprot ID: -
• Organism: Stutzerimonas zhaodongensis strain LQ01-5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3962923..3973789

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MKP10_RS18590 (MKP10_18590)	rpsI	3963643..3964035 (-)	393	WP_021209313.1	30S ribosomal protein S9	-
MKP10_RS18595 (MKP10_18595)	rplM	3964050..3964478 (-)	429	WP_019342644.1	50S ribosomal protein L13	-
MKP10_RS18600 (MKP10_18600)	-	3964876..3965913 (+)	1038	WP_241529094.1	NADP(H)-dependent aldo-keto reductase	-
MKP10_RS18605 (MKP10_18605)	-	3966004..3966696 (+)	693	WP_241529095.1	energy-coupling factor ABC transporter permease	-
MKP10_RS18610 (MKP10_18610)	yacG	3966753..3966950 (-)	198	WP_241529096.1	DNA gyrase inhibitor YacG	-
MKP10_RS18615 (MKP10_18615)	coaE	3966947..3967555 (-)	609	WP_241529097.1	dephospho-CoA kinase	-
MKP10_RS18620 (MKP10_18620)	pilD	3967923..3968789 (-)	867	WP_241529098.1	prepilin peptidase	Machinery gene
MKP10_RS18625 (MKP10_18625)	pilC	3968792..3970009 (-)	1218	WP_241529099.1	type II secretion system F family protein	Machinery gene
MKP10_RS18630 (MKP10_18630)	pilB	3970011..3971714 (-)	1704	WP_241529100.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MKP10_RS18640 (MKP10_18640)	-	3971941..3972429 (+)	489	Protein_3670	pilin	-
MKP10_RS18645 (MKP10_18645)	-	3972911..3973470 (+)	560	Protein_3671	REP-associated tyrosine transposase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31814.72 Da
• Isoelectric Point: 6.8828

>NTDB_id=662044 MKP10_RS18620 WP_241529098.1 3967923..3968789(-) (pilD) [Stutzerimonas zhaodongensis strain LQ01-5]
MDVVTFLASSTLAFVLCALVLGLLVGSFLNVVIHRLPIMMHRDWRAQAREYLDLPIEPTSTFNLVLPNSHCPQCDHEIRP
WENIPLVSWLALHGKCSSCRGPISSRYPLVELLCGLLSGYVAWHFGFTWQAGAVLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIANHFGLFAPLPDAVWGAVAGYLCLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGTIMLRMKKSNSGTTIPFGPYLAIAGWVALLWGDEITSAYLQFARF

Nucleotide

• Length: 867 bp

>NTDB_id=662044 MKP10_RS18620 WP_241529098.1 3967923..3968789(-) (pilD) [Stutzerimonas zhaodongensis strain LQ01-5]
ATGGATGTGGTGACTTTTCTGGCCAGCAGCACGCTGGCCTTTGTTTTATGTGCACTGGTGCTGGGTCTGCTGGTGGGCAG
TTTTCTCAACGTGGTGATCCATCGCCTGCCGATCATGATGCATCGGGACTGGCGTGCGCAGGCGCGTGAATATCTTGATT
TGCCGATCGAGCCGACTTCGACCTTCAATTTGGTTCTGCCTAACTCTCACTGCCCGCAGTGCGATCATGAAATACGTCCT
TGGGAAAATATTCCCTTGGTCAGCTGGCTAGCGCTGCATGGCAAATGTTCGTCGTGCCGTGGGCCGATCAGCAGTCGTTA
CCCCTTGGTCGAGTTACTCTGCGGTCTTTTGTCCGGCTATGTGGCCTGGCACTTTGGCTTTACCTGGCAGGCCGGTGCAG
TGCTGTTGCTGACGTGGGGCCTGCTGGCGATGAGCATGATCGATGTTGATCATCAGTTGTTGCCTGACTCCCTTGTGTTG
CCTCTGCTTTGGCTGGGCTTGATCGCTAACCATTTTGGTTTGTTTGCTCCGTTGCCTGATGCGGTGTGGGGGGCGGTTGC
TGGATATCTCTGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTTGTGACTGGCAAAGAGGGCATGGGCTACGGCGACTTCA
AGCTGCTGGCGATGCTGGGGGCTTGGGGTGGTTGGCAAGTTTTGCCGCTGACCATTCTTCTCTCTTCGGTCGTGGGAGCG
GTGCTAGGCACTATCATGCTGCGCATGAAAAAGTCGAACAGCGGGACAACCATTCCCTTCGGCCCCTACCTGGCGATAGC
GGGTTGGGTCGCGCTGCTCTGGGGTGATGAGATCACGTCGGCCTACCTGCAATTTGCCAGGTTTTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.246	95.833	0.549
pilD	Vibrio campbellii strain DS40M4	55.311	94.792	0.524
pilD	Acinetobacter nosocomialis M2	50	98.611	0.493
pilD	Acinetobacter baumannii D1279779	49.648	98.611	0.49
pilD	Neisseria gonorrhoeae MS11	52.852	91.319	0.483