Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ML603_RS00800 Genome accession   NZ_CP092887
Coordinates   127693..128088 (+) Length   131 a.a.
NCBI ID   WP_003060482.1    Uniprot ID   A0A9X8T1Q0
Organism   Streptococcus dysgalactiae subsp. equisimilis strain Karl     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 122693..133088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ML603_RS00770 (ML603_00770) proC 123055..123882 (-) 828 WP_256867161.1 pyrroline-5-carboxylate reductase -
  ML603_RS00775 (ML603_00775) pepA 123878..124945 (-) 1068 WP_143927081.1 glutamyl aminopeptidase -
  ML603_RS00780 (ML603_00780) - 125503..125787 (+) 285 WP_280641423.1 DUF4651 domain-containing protein -
  ML603_RS00785 (ML603_00785) - 125784..126101 (+) 318 WP_241067298.1 thioredoxin family protein -
  ML603_RS00790 (ML603_00790) ytpR 126120..126746 (+) 627 WP_192942727.1 YtpR family tRNA-binding protein -
  ML603_RS00795 (ML603_00795) - 126887..127615 (-) 729 WP_241067299.1 class I SAM-dependent methyltransferase -
  ML603_RS00800 (ML603_00800) ssbA 127693..128088 (+) 396 WP_003060482.1 single-stranded DNA-binding protein Machinery gene
  ML603_RS00805 (ML603_00805) - 128599..129561 (+) 963 WP_218662058.1 ABC transporter substrate-binding protein -
  ML603_RS00810 (ML603_00810) - 129591..130550 (+) 960 WP_241067300.1 ABC transporter substrate-binding protein -
  ML603_RS00815 (ML603_00815) - 130591..131475 (+) 885 WP_138124453.1 ABC transporter permease -
  ML603_RS00820 (ML603_00820) - 131484..132287 (+) 804 WP_015016554.1 ABC transporter ATP-binding protein -
  ML603_RS00825 (ML603_00825) - 132423..133064 (-) 642 WP_154412476.1 deoxynucleoside kinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14860.08 Da        Isoelectric Point: 7.1671

>NTDB_id=660906 ML603_RS00800 WP_003060482.1 127693..128088(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
MYNKVIMIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVANDLVDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=660906 ML603_RS00800 WP_003060482.1 127693..128088(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
ATGTATAATAAAGTGATAATGATTGGTCGGTTAGTGGCTAAACCAGAATTGGTAAAAACCGCTACAGATAAGCATGTAGC
ACGTCTCTCTTTGGCTGTTAATCGAAGATTTAAAAATGCTTCAGGAGAGCGAGAAGCAGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGACGGTGAACTTAGAACCCGT
AAATATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTGCTATGCCAGTCTTTTCAGTTATTAGAAAGTCGTGCTCA
GCGTGCGATGCGAGAAAATAATGTCGCCAATGACTTGGTAGATTTGGTTCTAGAAGAGGAGGAGTTGCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.154

89.313

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397