Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MK801_RS09520 Genome accession   NZ_CP092748
Coordinates   1898583..1898972 (-) Length   129 a.a.
NCBI ID   WP_015425843.1    Uniprot ID   A0A443LH63
Organism   Lactococcus lactis strain 17M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1892485..1898972 1898583..1898972 within 0


Gene organization within MGE regions


Location: 1892485..1898972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS09490 (MK801_09485) tmk 1892485..1893120 (-) 636 WP_015425847.1 dTMP kinase -
  MK801_RS09495 (MK801_09490) yycF 1893298..1893999 (+) 702 WP_003131580.1 response regulator YycF -
  MK801_RS09500 (MK801_09495) - 1893992..1895434 (+) 1443 WP_254255520.1 ATP-binding protein -
  MK801_RS09505 (MK801_09500) - 1895604..1896416 (+) 813 WP_254255521.1 MBL fold metallo-hydrolase -
  MK801_RS09510 (MK801_09505) groL 1896463..1898091 (-) 1629 WP_015425845.1 chaperonin GroEL -
  MK801_RS09515 (MK801_09510) groES 1898179..1898463 (-) 285 WP_003131589.1 co-chaperone GroES -
  MK801_RS09520 (MK801_09515) ssbB 1898583..1898972 (-) 390 WP_015425843.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14656.74 Da        Isoelectric Point: 8.3705

>NTDB_id=659980 MK801_RS09520 WP_015425843.1 1898583..1898972(-) (ssbB) [Lactococcus lactis strain 17M1]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAVKVEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=659980 MK801_RS09520 WP_015425843.1 1898583..1898972(-) (ssbB) [Lactococcus lactis strain 17M1]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGCGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTGGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTGTAAAGGTTGAAGAAACCTTACTTGATGCGGAAGAACTCCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A443LH63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

90.698

100

0.907
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60.769

100

0.612
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

56.154

100

0.566
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.762

81.395

0.364