Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SMUNUM_RS08755 Genome accession   NZ_AP014571
Coordinates   1774725..1775219 (-) Length   164 a.a.
NCBI ID   WP_002261867.1    Uniprot ID   A0AAX1K2T1
Organism   Streptococcus mutans LP13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1769725..1780219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS08725 (SMNUM_1652) - 1770344..1771288 (+) 945 WP_002262667.1 magnesium transporter CorA family protein -
  SMUNUM_RS08730 (SMNUM_1653) - 1771570..1772232 (+) 663 WP_002262668.1 DUF1129 domain-containing protein -
  SMUNUM_RS08735 (SMNUM_1654) hdrR 1772371..1772727 (+) 357 WP_002262669.1 LytTR family transcriptional regulator HdrR Regulator
  SMUNUM_RS08740 (SMNUM_1655) hdrM 1772724..1773410 (+) 687 WP_002265269.1 hdrR negative regulator HdrM Regulator
  SMUNUM_RS08745 (SMNUM_1656) - 1773418..1774137 (-) 720 WP_002262671.1 TraX family protein -
  SMUNUM_RS08750 (SMNUM_1657) rpsR 1774456..1774695 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  SMUNUM_RS08755 (SMNUM_1658) ssbA 1774725..1775219 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  SMUNUM_RS08760 (SMNUM_1659) rpsF 1775237..1775527 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  SMUNUM_RS08765 (SMNUM_1660) - 1775683..1775928 (-) 246 WP_002268629.1 hypothetical protein -
  SMUNUM_RS08770 (SMNUM_1661) - 1776233..1776436 (+) 204 WP_002263366.1 hypothetical protein -
  SMUNUM_RS08775 (SMNUM_1662) mutY 1777473..1778618 (+) 1146 WP_002263365.1 A/G-specific adenine glycosylase -
  SMUNUM_RS08780 (SMNUM_1663) - 1778806..1779855 (-) 1050 WP_002263364.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.97 Da        Isoelectric Point: 4.7187

>NTDB_id=65994 SMUNUM_RS08755 WP_002261867.1 1774725..1775219(-) (ssbA) [Streptococcus mutans LP13]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=65994 SMUNUM_RS08755 WP_002261867.1 1774725..1775219(-) (ssbA) [Streptococcus mutans LP13]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC
AACTTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTGATTT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC
AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT
CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT
GATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.261

72.561

0.372
  ssb Glaesserella parasuis strain SC1401

32.62

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.632

69.512

0.366
  ssbB/cilA Streptococcus mitis NCTC 12261

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae Rx1

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae D39

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae R6

50.42

72.561

0.366
  ssbB/cilA Streptococcus mitis SK321

50.42

72.561

0.366

Multiple sequence alignment