Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   SMUNUM_RS08740 Genome accession   NZ_AP014571
Coordinates   1772724..1773410 (+) Length   228 a.a.
NCBI ID   WP_002265269.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767724..1778410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS08720 - 1769723..1769944 (+) 222 WP_019317773.1 hypothetical protein -
  SMUNUM_RS08725 (SMNUM_1652) - 1770344..1771288 (+) 945 WP_002262667.1 magnesium transporter CorA family protein -
  SMUNUM_RS08730 (SMNUM_1653) - 1771570..1772232 (+) 663 WP_002262668.1 DUF1129 domain-containing protein -
  SMUNUM_RS08735 (SMNUM_1654) hdrR 1772371..1772727 (+) 357 WP_002262669.1 LytTR family transcriptional regulator HdrR Regulator
  SMUNUM_RS08740 (SMNUM_1655) hdrM 1772724..1773410 (+) 687 WP_002265269.1 hdrR negative regulator HdrM Regulator
  SMUNUM_RS08745 (SMNUM_1656) - 1773418..1774137 (-) 720 WP_002262671.1 TraX family protein -
  SMUNUM_RS08750 (SMNUM_1657) rpsR 1774456..1774695 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  SMUNUM_RS08755 (SMNUM_1658) ssbA 1774725..1775219 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  SMUNUM_RS08760 (SMNUM_1659) rpsF 1775237..1775527 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  SMUNUM_RS08765 (SMNUM_1660) - 1775683..1775928 (-) 246 WP_002268629.1 hypothetical protein -
  SMUNUM_RS08770 (SMNUM_1661) - 1776233..1776436 (+) 204 WP_002263366.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26087.14 Da        Isoelectric Point: 6.7581

>NTDB_id=65993 SMUNUM_RS08740 WP_002265269.1 1772724..1773410(+) (hdrM) [Streptococcus mutans LP13]
MKKNYFWYGLLGLLALYLITIAFIPGFHIFFSNMLMLALFFMLIALSNRSIFFFFLALGFLSIYLKDIFHFDYSTGPLFT
GIIIIGVILNSFLKPHYSYSYKGNHYFNMKQNANYIDNETDVFLKTLFSENTSYVTSQELNKIIIDTKFGEQSVDLSQAQ
FMTDSPEIHIDVSFGETNLRIPNNWKIINKTHSPFASISFSGFPSTNGDFINVTLTGTVAMGSLNIQY

Nucleotide


Download         Length: 687 bp        

>NTDB_id=65993 SMUNUM_RS08740 WP_002265269.1 1772724..1773410(+) (hdrM) [Streptococcus mutans LP13]
ATGAAAAAAAATTATTTTTGGTACGGTCTGCTTGGGCTTCTCGCACTTTACCTTATTACTATTGCTTTTATCCCGGGATT
TCATATTTTCTTTAGCAACATGTTGATGTTGGCCCTGTTCTTTATGTTAATAGCTTTGAGTAACAGGAGTATCTTCTTTT
TCTTTCTAGCCTTAGGTTTTCTTAGTATCTACTTGAAAGATATCTTTCATTTTGACTATTCTACCGGACCGCTTTTTACG
GGTATAATCATTATCGGCGTTATTTTAAATAGTTTCCTCAAACCACACTATTCTTATTCTTATAAAGGAAATCATTATTT
TAATATGAAACAAAATGCTAACTACATTGATAACGAAACAGATGTCTTTTTAAAAACACTTTTTTCTGAAAATACCAGTT
ATGTGACTTCTCAAGAATTAAATAAAATTATTATTGATACTAAGTTTGGAGAACAATCTGTTGATCTCTCTCAAGCTCAA
TTTATGACAGATTCTCCCGAAATTCATATAGATGTTAGCTTTGGTGAAACCAATCTGCGTATTCCAAACAACTGGAAAAT
CATCAATAAAACTCACTCCCCCTTTGCTTCCATTTCATTTTCAGGTTTTCCTAGCACAAATGGTGATTTTATTAACGTTA
CATTGACTGGAACAGTGGCTATGGGATCTCTAAACATTCAATATTAA

Domains

Predicted by InterproScan.

Cell wall-active antibiotics response 4TMS YvqF (LiaF-like_C)

(128-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

99.561

100

0.996

Multiple sequence alignment