Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AVFI_RS12025 Genome accession   NZ_CP092712
Coordinates   2629973..2631661 (-) Length   562 a.a.
NCBI ID   WP_012533907.1    Uniprot ID   B5FBN3
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2624973..2636661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS12005 (AVFI_12005) dam 2625660..2626490 (-) 831 WP_012534276.1 adenine-specific DNA-methyltransferase -
  AVFI_RS12010 (AVFI_12010) - 2626573..2628096 (-) 1524 WP_005421087.1 SPOR domain-containing protein -
  AVFI_RS12015 (AVFI_12015) aroB 2628105..2629193 (-) 1089 WP_011262699.1 3-dehydroquinate synthase -
  AVFI_RS12020 (AVFI_12020) aroK 2629230..2629748 (-) 519 WP_005421091.1 shikimate kinase AroK -
  AVFI_RS12025 (AVFI_12025) pilQ 2629973..2631661 (-) 1689 WP_012533907.1 type IV pilus secretin PilQ Machinery gene
  AVFI_RS12030 (AVFI_12030) pilP 2631748..2632266 (-) 519 WP_005421095.1 pilus assembly protein PilP Machinery gene
  AVFI_RS12035 (AVFI_12035) pilO 2632259..2632837 (-) 579 WP_005421098.1 type 4a pilus biogenesis protein PilO Machinery gene
  AVFI_RS12040 (AVFI_12040) - 2632837..2633403 (-) 567 WP_011262703.1 PilN domain-containing protein -
  AVFI_RS12045 (AVFI_12045) pilM 2633388..2634389 (-) 1002 WP_054775331.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 60824.31 Da        Isoelectric Point: 4.3664

>NTDB_id=659796 AVFI_RS12025 WP_012533907.1 2629973..2631661(-) (pilQ) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MFSFVHLNAIAEESVMNQLVEVDFQLSKKKEGVITVELASAAATVDLRKEKDKLIIELHDTKVSDDKLVILDVEDFATLV
SRIETFREPSSTVLSVDVKGDYQYDYFLKGPSLQVVVSQLPESEKKSPISSNSEDKSKPISINFQDIPVRHVLQLIADYN
DFNLVVADSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVEGNVVLIAPKTELDAQEQQVLEQAQMASELAALSSEILSI
KYAKASDIAELLVGEGEITMLSSRGSITVDERTNSLLLRDLPENITVIKDIIDTLDIPIKQVQIEARIVTVNEGNLDELG
VRWGITNTNGSTTVGGSIESNLAAVGLYDGGGSDDKKSGNNSLPVDDFLNVNLGLANPAASSIAFQVAKLGSDLLLDLEL
SALQAESKAEIISSPRLITTNKKPAYIEQGTEIPYLEASSSGATSVSFKKAVLSLMVTPQITPDNRLVLDLTVTQDRPGQ
VVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKVPLLGDLPLLGALFRRSSENIGKKELLIFVTPKVV
IQ

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=659796 AVFI_RS12025 WP_012533907.1 2629973..2631661(-) (pilQ) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGTTCAGTTTCGTTCATTTGAATGCCATTGCTGAAGAGTCAGTGATGAATCAGCTTGTTGAAGTAGATTTTCAACTAAG
TAAGAAAAAAGAAGGTGTCATAACAGTAGAGTTAGCTTCTGCTGCTGCGACTGTGGATTTACGTAAAGAAAAAGATAAGT
TGATTATTGAATTGCATGACACCAAAGTCAGCGATGATAAATTGGTTATCTTAGATGTTGAAGATTTTGCCACTCTTGTT
TCTCGTATTGAAACATTTAGAGAGCCAAGTAGTACCGTTTTATCTGTTGATGTTAAAGGCGACTATCAATATGACTACTT
CCTGAAAGGGCCTTCTTTGCAAGTGGTGGTATCTCAATTGCCAGAAAGTGAGAAAAAATCGCCAATTAGCTCGAATAGTG
AAGATAAAAGTAAGCCTATTTCGATTAACTTCCAAGATATTCCAGTTCGTCATGTATTGCAGCTGATCGCGGATTATAAT
GATTTTAACTTGGTTGTTGCGGACTCTGTTACGGGGAATTTAACCTTACGTCTGGATGGTGTGCCATGGCAGCAAGTGCT
TGATATTATTCTTCAAGTTAAAGGGTTAGATAAACGTGTCGAGGGTAACGTTGTTTTGATCGCACCTAAAACAGAGCTTG
ATGCACAAGAGCAGCAAGTATTAGAGCAAGCTCAAATGGCATCTGAGCTGGCTGCGCTATCATCTGAGATCCTTTCTATT
AAATACGCTAAAGCGTCAGATATTGCAGAGCTGCTTGTTGGTGAAGGTGAAATTACCATGTTATCTAGCCGTGGCAGTAT
CACGGTAGATGAACGTACAAACTCTTTATTGTTAAGAGACCTTCCAGAGAACATTACGGTAATCAAAGACATCATTGATA
CGTTAGATATTCCAATTAAACAGGTTCAAATTGAAGCTCGTATTGTAACGGTAAATGAAGGTAACTTAGATGAGTTAGGG
GTTCGTTGGGGGATAACCAATACCAACGGCAGTACAACAGTTGGTGGCTCTATTGAAAGCAATTTAGCCGCTGTGGGATT
GTATGATGGCGGTGGAAGTGATGATAAGAAGAGTGGCAATAATAGTCTTCCTGTCGATGATTTCTTAAATGTGAATTTAG
GGCTAGCGAATCCTGCCGCTTCAAGCATTGCTTTTCAGGTGGCGAAATTAGGCTCTGATTTATTGCTTGATTTAGAACTT
TCGGCACTTCAAGCAGAATCGAAGGCTGAGATCATCTCTAGTCCACGTTTGATTACGACCAATAAAAAACCTGCCTATAT
TGAGCAAGGTACAGAAATTCCTTACTTAGAAGCTTCATCCAGCGGAGCAACATCGGTATCGTTTAAAAAAGCGGTATTAA
GCTTGATGGTAACACCGCAGATTACCCCAGATAATCGATTAGTTTTAGACTTAACGGTGACACAAGATAGACCTGGGCAA
GTGGTTAAAACGGGTACTGGTGAGGCGGTAGCTATTGATACTCAACGTATTGGTACTCAAGTATTAGTTGATAATGGAGA
AACGGTTGTTTTAGGTGGTATTTATCAACATTCGTTATCAAATAGCGTTGAGAAAGTGCCTCTTCTTGGTGACTTACCTC
TGCTTGGGGCGTTATTTCGTCGAAGCTCTGAAAATATAGGTAAAAAAGAATTATTGATATTCGTTACGCCAAAAGTTGTT
ATACAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(402-560)

Bacterial type II/III secretion system short domain (Secretin_N)

(236-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5FBN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

71.377

98.221

0.701
  pilQ Vibrio cholerae strain A1552

70.29

98.221

0.69
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

70.29

98.221

0.69
  comQ Acinetobacter baylyi ADP1

39.859

100

0.402
  pilQ Pseudomonas aeruginosa PAK

40.727

97.865

0.399
  pilQ Acinetobacter baumannii strain A118

38.448

100

0.397
  pilQ Acinetobacter baumannii D1279779

38.448

100

0.397
  pilQ Legionella pneumophila strain Lp02

39.455

97.865

0.386
  pilQ Legionella pneumophila strain ERS1305867

39.455

97.865

0.386